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ASM3029542v1

Organism name:
Mesoterricola sediminis (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: W786
BioSample:
SAMD00449648
BioProject:
PRJDB13273
Submitter:
Bioproduction Research Institute
Date:
2023/04/18
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_030295425.1 (latest)
RefSeq assembly accession:
GCF_030295425.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. 0.4.7
Genome coverage:
2222x
Sequencing technology:
MGI DNBSEQ; Nanopore GridION

IDs: 16971561 [UID] 43583288 [GenBank] 49114768 [RefSeq]

See Genome Information for Mesoterricola sediminis

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotated by DFAST https://dfast.ddbj.nig.ac.jp/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/18/2023 12:20:27
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,951
CDSs (total)::3,892
Genes (coding)::3,854
CDSs (with protein)::3,854
Genes (RNA)::59
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::49
ncRNAs::4
Pseudo Genes (total)::38
CDSs (without protein)::38
Pseudo Genes (ambiguous residues)::0 of 38
Pseudo Genes (frameshifted)::17 of 38
Pseudo Genes (incomplete)::21 of 38
Pseudo Genes (internal stop)::8 of 38
Pseudo Genes (multiple problems)::8 of 38
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,524,604
Total ungapped length4,524,604
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_030295435.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP027081.1=NZ_AP027081.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,524,604

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mesoterricola sediminisMesoterricola sediminis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_030295405.1Mesoterricola silvestristype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.3042.6938.67

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected