U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM3131652v1

Organism name:
Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: ATCC:6051
Infraspecific name:
Strain: ATCC 6051
BioSample:
SAMN12236531
BioProject:
PRJNA553198
Submitter:
American Type Culture Collection (ATCC)
Date:
2023/09/08
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_031316525.1 (latest)
RefSeq assembly accession:
GCF_031316525.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VKQD01
Assembly method:
SPAdes v. 3.12.0
Expected final version:
yes
Genome coverage:
350.17x
Sequencing technology:
Illumina MiSeq

IDs: 18442521 [UID] 47175778 [GenBank] 47222848 [RefSeq]

See Genome Information for Bacillus subtilis

There are 1066 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Date::07/19/2019 15:36:45
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Provider::NCBI
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Annotation Software revision::4.8
Genes (total)::4,557
CDSs (total)::4,478
Genes (coding)::4,424
CDSs (with protein)::4,424
Genes (RNA)::79
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::71
ncRNAs::5
Pseudo Genes (total)::54
CDSs (without protein)::54
Pseudo Genes (ambiguous residues)::0 of 54
Pseudo Genes (frameshifted)::39 of 54
Pseudo Genes (incomplete)::24 of 54
Pseudo Genes (internal stop)::16 of 54
Pseudo Genes (multiple problems)::22 of 54
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,264,639
Total ungapped length4,264,639
Number of contigs51
Contig N502,215,957
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)51

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,264,639514,264,6392,215,95700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10Bacillus subtilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000009045.1Bacillus subtilis subsp. subtilis str. 168type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000009045.1Bacillus subtilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9997.6898.82
Best-match type99.9997.6898.82

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna