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ASM3303757v1

Organism name:
Streptococcus equi subsp. equi (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: XJ5012
BioSample:
SAMN37264176
BioProject:
PRJNA1012562
Submitter:
Xinjiang agricultural university
Date:
2023/10/25
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_033037575.1 (latest)
RefSeq assembly accession:
GCF_033037575.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 2017
Expected final version:
yes
Reference guided assembly:
Streptococcus equi subspecies equi 4047
Genome coverage:
2196100 bpx
Sequencing technology:
PacBio RSII

IDs: 19394751 [UID] 49329268 [GenBank] 49418328 [RefSeq]

See Genome Information for Streptococcus equi

There are 1813 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/28/2023 13:17:49
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,130
CDSs (total)::2,042
Genes (coding)::1,945
CDSs (with protein)::1,945
Genes (RNA)::88
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::66
ncRNAs::4
Pseudo Genes (total)::97
CDSs (without protein)::97
Pseudo Genes (ambiguous residues)::0 of 97
Pseudo Genes (frameshifted)::31 of 97
Pseudo Genes (incomplete)::55 of 97
Pseudo Genes (internal stop)::24 of 97
Pseudo Genes (multiple problems)::11 of 97
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,211,905
Total ungapped length2,211,905
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_033037585.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP134538.1=NZ_CP134538.1
Plasmid unnamedCP134539.1=NZ_CP134539.1

Assembly statistics

MoleculeTotal
Length
All2,211,905
Chromosome 2,196,100
Plasmid unnamed15,805

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus equi subsp. equiStreptococcus equi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900637675.1Streptococcus equi subsp. equitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900637675.1Streptococcus equitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9599.6597.82
Best-match type99.9599.6597.82

ANI result

Taxonomy check statusBest match statusComment
OKsubspecies-matchna