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Source database (GenBank or RefSeq) File type

Oner_Uvic_2.0

Organism name:

Oncorhynchus nerka (sockeye salmon)

Isolate:

Pitt River

Sex:

male

BioSample:

SAMN35642774

BioProject:

PRJNA530256

Submitter:

Fisheries and Oceans Canada

Date:

2024/01/08

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_034236695.1 (latest)

RefSeq assembly accession:

GCF_034236695.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: non-nuclear assembly-unit

Data displayed for RefSeq version

WGS Project:

JAUJDZ01

Assembly method:

Flye v. 2.8.1-b1684; Racon v. 1.4.16; Pilon x2 v. 1.22; Chromonomer v. 1.10; Salsa2 v. 2022; Juicebox v. 1.11.08

Expected final version:

yes

Genome coverage:

23.0x

Sequencing technology:

Oxford Nanopore MinION; MGI; Hi-C

IDs: 20637361 [UID] 52092828 [GenBank] 57150808 [RefSeq]

See Genome Information for Oncorhynchus nerka

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_034236695.1	≠	GCF_034236695.1	Oner_Uvic_2.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,645,636,310
Total ungapped length	2,643,888,754
Gaps between scaffolds	0
Number of scaffolds	11,378
Scaffold N50	93,356,810
Scaffold L50	13
Number of contigs	15,728
Contig N50	2,842,582
Contig L50	207
Total number of chromosomes and plasmids	30
Number of component sequences (WGS or clone)	12,436

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Linkage Group LG1	CM068911.1	=	NC_088396.1	0
Linkage Group LG2	CM068912.1	=	NC_088397.1	0
Linkage Group LG3	CM068913.1	=	NC_088398.1	0
Linkage Group LG4	CM068914.1	=	NC_088399.1	0
Linkage Group LG5	CM068915.1	=	NC_088400.1	0
Linkage Group LG6	CM068916.1	=	NC_088401.1	0
Linkage Group LG7	CM068917.1	=	NC_088402.1	0
Linkage Group LG8	CM068918.1	=	NC_088403.1	0
Linkage Group LG9a	CM068919.1	=	NC_088404.1	0
Linkage Group LG10	CM068920.1	=	NC_088405.1	0
Linkage Group LG11	CM068921.1	=	NC_088406.1	0
Linkage Group LG12	CM068922.1	=	NC_088407.1	0
Linkage Group LG13	CM068923.1	=	NC_088408.1	0
Linkage Group LG14	CM068924.1	=	NC_088409.1	0
Linkage Group LG15	CM068925.1	=	NC_088410.1	0
Linkage Group LG16	CM068926.1	=	NC_088411.1	0
Linkage Group LG17	CM068927.1	=	NC_088412.1	0
Linkage Group LG18	CM068928.1	=	NC_088413.1	0
Linkage Group LG19	CM068929.1	=	NC_088414.1	0
Linkage Group LG20	CM068930.1	=	NC_088415.1	0
Linkage Group LG21	CM068931.1	=	NC_088416.1	0
Linkage Group LG22	CM068932.1	=	NC_088417.1	0
Linkage Group LG23	CM068933.1	=	NC_088418.1	0
Linkage Group LG24	CM068934.1	=	NC_088419.1	0
Linkage Group LG25	CM068935.1	=	NC_088420.1	0
Linkage Group LG26	CM068936.1	=	NC_088421.1	0
Linkage Group LG27	CM068937.1	=	NC_088422.1	0
Linkage Group LG28	CM068938.1	=	NC_088423.1	0
Linkage Group LG9b	CM068939.1	=	NC_088424.1	0
unplaced	n/a	n/a	n/a	11,348

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,645,619,652	11,377	2,643,872,096	93,356,810	4,350
Linkage Group LG1	59,391,223	1	59,378,013	59,391,223	45
Linkage Group LG2	102,575,750	1	102,520,250	102,575,750	155
Linkage Group LG3	87,668,126	1	87,646,926	87,668,126	68
Linkage Group LG4	103,911,613	1	103,882,013	103,911,613	88
Linkage Group LG5	68,530,378	1	68,514,278	68,530,378	49
Linkage Group LG6	93,356,810	1	93,334,010	93,356,810	76
Linkage Group LG7	98,080,982	1	98,060,982	98,080,982	64
Linkage Group LG8	72,693,348	1	72,617,248	72,693,348	193
Linkage Group LG9a	64,679,636	1	64,659,936	64,679,636	57
Linkage Group LG10	103,394,078	1	103,347,178	103,394,078	129
Linkage Group LG11	73,471,915	1	73,455,961	73,471,915	52
Linkage Group LG12	94,065,161	1	94,017,061	94,065,161	133
Linkage Group LG13	106,054,950	1	106,031,150	106,054,950	70
Linkage Group LG14	105,625,790	1	105,543,690	105,625,790	213
Linkage Group LG15	106,048,220	1	105,964,820	106,048,220	218
Linkage Group LG16	50,733,816	1	50,716,116	50,733,816	49
Linkage Group LG17	53,000,276	1	52,985,176	53,000,276	39
Linkage Group LG18	85,521,325	1	85,425,625	85,521,325	245
Linkage Group LG19	51,505,889	1	51,490,189	51,505,889	57
Linkage Group LG20	97,995,367	1	97,967,267	97,995,367	85
Linkage Group LG21	36,419,810	1	36,405,510	36,419,810	47
Linkage Group LG22	107,327,025	1	107,296,325	107,327,025	111
Linkage Group LG23	60,606,903	1	60,591,803	60,606,903	55
Linkage Group LG24	100,714,802	1	100,693,702	100,714,802	63
Linkage Group LG25	59,179,564	1	59,166,864	59,179,564	39
Linkage Group LG26	56,873,644	1	56,774,344	56,873,644	241
Linkage Group LG27	109,668,754	1	109,578,754	109,668,754	232
Linkage Group LG28	85,572,606	1	85,553,206	85,572,606	58
Linkage Group LG9b	54,961,907	1	54,943,507	54,961,907	56
unplaced	295,989,984	11,348	295,310,192	90,451	1,363

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Oner_Uvic_2.0

See Genome Information for Oncorhynchus nerka

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear