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ASM3580455v1

Organism name:
Bacillus subtilis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: CBP-3231
BioSample:
SAMN33940184
BioProject:
PRJNA949242
Submitter:
USDA-ARS-NCAUR
Date:
2024/01/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_035804555.1 (latest)
RefSeq assembly accession:
GCF_035804555.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JARRSO01
Assembly method:
CLC NGS Cell v. 21
Expected final version:
yes
Genome coverage:
239.02049667962555x
Sequencing technology:
Illumina NovaSeq

IDs: 20938761 [UID] 52723798 [GenBank] 52862528 [RefSeq]

See Genome Information for Bacillus subtilis

There are 1045 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Date::04/03/2023 08:57:54
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Provider::NCBI
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Annotation Software revision::6.5
Genes (total)::4,581
CDSs (total)::4,478
Genes (coding)::4,228
CDSs (with protein)::4,228
Genes (RNA)::103
rRNAs::6, 3, 5 (5S, 16S, 23S)
complete rRNAs::6, 1 (5S, 23S)
partial rRNAs::3, 4 (16S, 23S)
tRNAs::84
ncRNAs::5
Pseudo Genes (total)::250
CDSs (without protein)::250
Pseudo Genes (ambiguous residues)::0 of 250
Pseudo Genes (frameshifted)::143 of 250
Pseudo Genes (incomplete)::107 of 250
Pseudo Genes (internal stop)::46 of 250
Pseudo Genes (multiple problems)::39 of 250
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,194,542
Total ungapped length4,194,443
Gaps between scaffolds0
Number of scaffolds148
Scaffold N5064,924
Scaffold L5021
Number of contigs149
Contig N5064,924
Contig L5021
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)148

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,194,5421484,194,44364,92410

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus subtilisBacillus subtilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000009045.1Bacillus subtilis subsp. subtilis str. 168type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000009045.1Bacillus subtilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.5485.8085.37
Best-match type98.5485.8085.37

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna