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ASM3580511v1

Organism name:
Bacillus subtilis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: CBP-3197
BioSample:
SAMN33940154
BioProject:
PRJNA949242
Submitter:
USDA-ARS-NCAUR
Date:
2024/01/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_035805115.1 (latest)
RefSeq assembly accession:
GCF_035805115.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JARRTR01
Assembly method:
CLC NGS Cell v. 21
Expected final version:
yes
Genome coverage:
155.30002370839478x
Sequencing technology:
Illumina NovaSeq

IDs: 20939041 [UID] 52724358 [GenBank] 52867228 [RefSeq]

See Genome Information for Bacillus subtilis

There are 1057 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Date::04/03/2023 09:22:56
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Provider::NCBI
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Annotation Software revision::6.5
Genes (total)::4,634
CDSs (total)::4,534
Genes (coding)::4,288
CDSs (with protein)::4,288
Genes (RNA)::100
rRNAs::5, 3, 3 (5S, 16S, 23S)
complete rRNAs::5, 1, 1 (5S, 16S, 23S)
partial rRNAs::2, 2 (16S, 23S)
tRNAs::84
ncRNAs::5
Pseudo Genes (total)::246
CDSs (without protein)::246
Pseudo Genes (ambiguous residues)::0 of 246
Pseudo Genes (frameshifted)::138 of 246
Pseudo Genes (incomplete)::106 of 246
Pseudo Genes (internal stop)::47 of 246
Pseudo Genes (multiple problems)::38 of 246
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,230,569
Total ungapped length4,230,472
Gaps between scaffolds0
Number of scaffolds142
Scaffold N5069,550
Scaffold L5022
Number of contigs143
Contig N5069,550
Contig L5022
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)142

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,230,5691424,230,47269,55010

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus subtilisBacillus subtilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000009045.1Bacillus subtilis subsp. subtilis str. 168type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000009045.1Bacillus subtilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.5484.8985.19
Best-match type98.5484.8985.19

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna