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ASM3581287v1

Organism name:
Bacillus subtilis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: B-3563
BioSample:
SAMN33940409
BioProject:
PRJNA802201
Submitter:
USDA-ARS-NCAUR
Date:
2024/01/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_035812875.1 (latest)
RefSeq assembly accession:
GCF_035812875.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JARSPB01
Assembly method:
CLC NGS Cell v. 21
Expected final version:
yes
Genome coverage:
355.7646114504319x
Sequencing technology:
Illumina NovaSeq

IDs: 20942921 [UID] 52733638 [GenBank] 52851668 [RefSeq]

See Genome Information for Bacillus subtilis

There are 1045 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Date::04/03/2023 19:11:21
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Provider::NCBI
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Annotation Software revision::6.5
Genes (total)::4,395
CDSs (total)::4,293
Genes (coding)::4,238
CDSs (with protein)::4,238
Genes (RNA)::102
rRNAs::8, 6, 1 (5S, 16S, 23S)
complete rRNAs::7, 1, 1 (5S, 16S, 23S)
partial rRNAs::1, 5 (5S, 16S)
tRNAs::82
ncRNAs::5
Pseudo Genes (total)::55
CDSs (without protein)::55
Pseudo Genes (ambiguous residues)::0 of 55
Pseudo Genes (frameshifted)::22 of 55
Pseudo Genes (incomplete)::33 of 55
Pseudo Genes (internal stop)::13 of 55
Pseudo Genes (multiple problems)::10 of 55
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,148,647
Total ungapped length4,148,647
Number of contigs19
Contig N50902,658
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)19

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,148,647194,148,647902,65800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus subtilisBacillus subtilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000009045.1Bacillus subtilis subsp. subtilis str. 168type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000009045.1Bacillus subtilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.9898.39
Best-match type99.9999.9898.39

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna