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ASM3840359v1

Organism name:
Proteus mirabilis (enterobacteria)
Taxonomy check:
OK
BioSample:
SAMN37689396
BioProject:
PRJNA982542
Submitter:
Universtity Hospital Cologne
Date:
2024/04/24
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_038403595.1 (latest)
RefSeq assembly accession:
GCF_038403595.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
flye v. v2.9
Genome coverage:
100x
Sequencing technology:
Oxford Nanopore PromethION

IDs: 56694478 [UID] 56694478 [GenBank] 56740868 [RefSeq]

See Genome Information for Proteus mirabilis

There are 3750 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_038403595.1-RS_2024_04_23
Annotation Date::04/23/2024 12:42:38
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,217
CDSs (total)::4,108
Genes (coding)::4,022
CDSs (with protein)::4,022
Genes (RNA)::109
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::83
ncRNAs::4
Pseudo Genes (total)::86
CDSs (without protein)::86
Pseudo Genes (ambiguous residues)::0 of 86
Pseudo Genes (frameshifted)::26 of 86
Pseudo Genes (incomplete)::65 of 86
Pseudo Genes (internal stop)::15 of 86
Pseudo Genes (multiple problems)::15 of 86
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,395,211
Total ungapped length4,395,211
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_038403594.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP151676.1=NZ_CP151676.1
Plasmid unnamedCP151677.1=NZ_CP151677.1
Plasmid unnamed2CP151678.1=NZ_CP151678.1

Assembly statistics

MoleculeTotal
Length
All4,395,211
Chromosome 4,327,476
Plasmid unnamed40,918
Plasmid unnamed226,817

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Proteus mirabilisProteus mirabilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000160755.1Proteus mirabilis ATCC 29906type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000160755.1Proteus mirabilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3184.4493.37
Best-match type99.3184.4493.37

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna