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ASM3903157v1

Organism name:
Bifidobacterium bifidum (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 1001216st1_G12_RTP31141_220114
BioSample:
SAMN40657050
BioProject:
PRJNA1093465
Submitter:
Icahn School of Medicine at Mount Sinai
Date:
2024/05/02
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_039031575.1 (latest)
RefSeq assembly accession:
GCF_039031575.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JBCITT01
Assembly method:
SPAdes v. v3.14.1
Expected final version:
yes
Genome coverage:
25.9x
Sequencing technology:
Illumina

IDs: 22521191 [UID] 57781688 [GenBank] 58665678 [RefSeq]

See Genome Information for Bifidobacterium bifidum

There are 364 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,253,549
Total ungapped length2,253,128
Gaps between scaffolds0
Number of scaffolds33
Scaffold N50113,663
Scaffold L508
Number of contigs39
Contig N50113,663
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)33

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,253,549332,253,128113,66360

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bifidobacterium bifidumBifidobacterium bifidum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000741085.1Bifidobacterium bifidumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000741085.1Bifidobacterium bifidumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9790.2492.06
Best-match type98.9790.2492.06

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna