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Source database (GenBank or RefSeq) File type

ASM3952146v1

Organism name:: Faecalicatena orotica (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Culture-collection: JCM:1429
Infraspecific name:: Strain: JCM 1429
BioSample:: SAMD00644932
BioProject:: PRJDB10510
Submitter:: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)
Date:: 2024/02/23
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_039521465.1 (latest)
RefSeq assembly accession:: GCF_039521465.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: BAAACK01
Assembly method:: SOAPdenovo v. 2.04; SPAdes v. 3.13.0; Velvet v. 1.2.10; Platanus-b v. 1.2.8
Genome coverage:: 231x
Sequencing technology:: MGISEQ-2000

IDs: 22552411 [UID] 58704138 [GenBank] 58815048 [RefSeq]

See Genome Information for Faecalicatena orotica

Pathogen Detection Resources

There are 7 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_039521465.1	=	GCF_039521465.1	ASM3952146v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Genome sequencing and analysis were conducted under the Global Catalogue of Microorganisms (GCM) 10K type strain sequencing project (http://gctype.wdcm.org). The genomic data are also available at http://gctype.wdcm.org/sequencing/GCM10008910 

Annotated by DFAST https://dfast.ddbj.nig.ac.jp/

Global statistics

Total sequence length	5,599,012
Total ungapped length	5,598,834
Gaps between scaffolds	0
Number of scaffolds	33
Scaffold N50	311,396
Scaffold L50	7
Number of contigs	38
Contig N50	311,396
Contig L50	7
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	33

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	82.79	15.32	16.57

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ASM3952146v1

See Genome Information for Faecalicatena orotica

Pathogen Detection Resources

There are 7 assemblies for this organism

History (Show revision history)

Comment

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Best-matching type-strain assembly for declared species

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Average Nucleotide Identity (ANI) data

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