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IMG-taxon 2547132509 annotated assembly

Organism name:
Bacillus subtilis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: CC120222-01
BioSample:
SAMN02744787
BioProject:
PRJEB20425
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2017/04/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_900177305.1 (latest)
RefSeq assembly accession:
GCF_900177305.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FWZZ01
Genome coverage:
195x

IDs: 1076661 [UID] 4390048 [GenBank] 4404218 [RefSeq]

See Genome Information for Bacillus subtilis

There are 1068 assemblies for this organism

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History (Show revision history)

Comment

The organism was changed from 'Bacillus sp. CC120222-01' to 'Bacillus subtilis' in July 2020.

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##
This Genome (query)::GCA_900177305.1
Current Name::Bacillus subtilis
Previous Name::Bacillus sp. CC120222-01
Date Updated::2020-07-30
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_012931705.1
A1 Name::Bacillus subtilis
A1 ANI::98.62%
A1 Query Coverage::91.16%
A1 Subject Coverage::87.71%
Analysis 2 (A2)::Query vs. NO-TYPE genome for previous name
A2 Genome (subject)::no-type
A2 Name::Bacillus sp. CC120222-01
A2 ANI::0%
A2 Query Coverage::0%
A2 Subject Coverage::0%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length4,071,911
Total ungapped length4,067,511
Gaps between scaffolds0
Number of scaffolds19
Scaffold N50417,555
Scaffold L503
Number of contigs23
Contig N50417,555
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)19

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,071,911194,067,511417,55540

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus subtilisBacillus subtilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001697265.1Bacillus subtilis subsp. subtilistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001697265.1Bacillus subtilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.6291.8088.67
Best-match type98.6291.8088.67

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna