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Source database (GenBank or RefSeq) File type

52551_F01

Organism name:: Listeria ivanovii subsp. londoniensis (firmicutes)
Taxonomy check:: Inconclusive
Infraspecific name:: Culture-collection: NCTC:12701
Infraspecific name:: Serovar: not available: to be reported later
Infraspecific name:: Strain: NCTC12701
BioSample:: SAMEA26389918
BioProject:: PRJEB6403
Submitter:: SC
Date:: 2018/12/20
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_900637745.1 (latest)
RefSeq assembly accession:: GCF_900637745.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Genome coverage:: 100x

IDs: 2180641 [UID] 8123638 [GenBank] 8149858 [RefSeq]

See Genome Information for Listeria ivanovii

Pathogen Detection Resources

There are 49 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_900637745.1	=	GCF_900637745.1	52551_F01	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/13/2024 02:18:41
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,977
CDSs (total)::2,888
Genes (coding)::2,831
CDSs (with protein)::2,831
Genes (RNA)::89
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::67
ncRNAs::4
Pseudo Genes (total)::57
CDSs (without protein)::57
Pseudo Genes (ambiguous residues)::0 of 57
Pseudo Genes (frameshifted)::30 of 57
Pseudo Genes (incomplete)::34 of 57
Pseudo Genes (internal stop)::11 of 57
Pseudo Genes (multiple problems)::18 of 57
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,007,116
Total ungapped length	3,007,116
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	93.36	85.66	87.95
Best-match type	93.36	85.66	87.95

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52551_F01

See Genome Information for Listeria ivanovii

Pathogen Detection Resources

There are 49 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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