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Source database (GenBank or RefSeq) File type

57043_C01

Organism name:: Porphyromonas cangingivalis (CFB group bacteria)
Taxonomy check:: OK
Infraspecific name:: Culture-collection: NCTC:12856
Infraspecific name:: Serovar: not available: to be reported later
Infraspecific name:: Strain: NCTC12856
BioSample:: SAMEA104167205
BioProject:: PRJEB6403
Submitter:: SC
Date:: 2018/12/20
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_900638305.1 (latest)
RefSeq assembly accession:: GCF_900638305.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Genome coverage:: 100x

IDs: 2181171 [UID] 8124698 [GenBank] 8154658 [RefSeq]

See Genome Information for Porphyromonas cangingivalis

Pathogen Detection Resources

There are 8 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_900638305.1	=	GCF_900638305.1	57043_C01	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Name::GCF_900638305.1-RS_2024_03_28
Annotation Date::03/28/2024 04:02:59
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,013
CDSs (total)::1,950
Genes (coding)::1,927
CDSs (with protein)::1,927
Genes (RNA)::63
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::46
ncRNAs::2
Pseudo Genes (total)::23
CDSs (without protein)::23
Pseudo Genes (ambiguous residues)::0 of 23
Pseudo Genes (frameshifted)::16 of 23
Pseudo Genes (incomplete)::7 of 23
Pseudo Genes (internal stop)::2 of 23
Pseudo Genes (multiple problems)::2 of 23
CRISPR Arrays::4
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,404,857
Total ungapped length	2,404,857
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	99.99	98.36	99.95
Best-match type	99.99	98.36	99.95

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57043_C01

See Genome Information for Porphyromonas cangingivalis

Pathogen Detection Resources

There are 8 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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