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IDs: 7920821 [UID] 21712218 [GenBank] 22784178 [RefSeq]
The assembly fSynAcu1.2 is based on 96x PacBio data, 190x coverage 10X Genomics Chromium data, and 159x coverage Dovetail Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly ... generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny to medaka. more
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