U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



41800_B01

Organism name:
Streptococcus pseudoporcinus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Serovar: Group E Serotypes
Infraspecific name:
Strain: NCTC5968
BioSample:
SAMEA3542436
BioProject:
PRJEB6403
Submitter:
SC
Date:
2019/06/14
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_902109505.1 (latest)
RefSeq assembly accession:
GCF_902109505.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABFNW01
Genome coverage:
100x

IDs: 3522081 [UID] 11368528 [GenBank] 13010618 [RefSeq]

See Genome Information for Streptococcus pseudoporcinus

There are 10 assemblies for this organism

See more

History (Show revision history)

Comment

The organism was changed from 'Streptococcus sp. NCTC 5968' to 'Streptococcus pseudoporcinus' in July 2020.

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##
This Genome (query)::GCA_902109505.1
Current Name::Streptococcus pseudoporcinus
Previous Name::Streptococcus sp. NCTC 5968
Date Updated::2020-07-31
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_000188035.3
A1 Name::Streptococcus pseudoporcinus
A1 ANI::98.12%
A1 Query Coverage::82.97%
A1 Subject Coverage::84.17%
Analysis 2 (A2)::Query vs. NO-TYPE genome for previous name
A2 Genome (subject)::no-type
A2 Name::Streptococcus sp. NCTC 5968
A2 ANI::0%
A2 Query Coverage::0%
A2 Subject Coverage::0%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length2,157,628
Total ungapped length2,157,628
Number of contigs3
Contig N502,121,223
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)3

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,157,62832,157,6282,121,22300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus pseudoporcinusStreptococcus pseudoporcinus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900637075.1Streptococcus pseudoporcinustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900637075.1Streptococcus pseudoporcinustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.1183.1283.18
Best-match type98.1183.1283.18

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna