fMyrMur1.1

Organism name:: Myripristis murdjan (pinecone soldierfish)
BioSample:: SAMEA4872133
BioProject:: PRJEB33188
Submitter:: SC
Date:: 2019/07/03
Assembly type:: haploid (principal pseudohaplotype of diploid)
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_902150065.1 (latest)
RefSeq assembly accession:: GCF_902150065.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: CABFVW01
Genome coverage:: 45x

IDs: 3790201 [UID] 12011548 [GenBank] 12395918 [RefSeq]

See Genome Information for Myripristis murdjan

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_902150065.1	=	GCF_902150065.1	fMyrMur1.1	Chromosome	Latest GenBank, Latest RefSeq

Comment

The assembly fMyrMur1.1 is based on 
45x PacBio data, 
89x coverage 10X Genomics Chromium data, BioNano data and 
39x coverage Arima Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial ... PacBio assembly generation with Falcon-unzip, retained haplotig identification with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny to medaka.  more

Global statistics

Total sequence length	835,254,674
Total ungapped length	833,388,842
Gaps between scaffolds	0
Number of scaffolds	87
Scaffold N50	34,950,760
Scaffold L50	11
Number of contigs	340
Contig N50	14,475,636
Contig L50	20
Total number of chromosomes and plasmids	24
Number of component sequences (WGS or clone)	87

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	LR597550.1	=	NC_043980.1	0
Chromosome 2	LR597551.1	=	NC_043981.1	0
Chromosome 3	LR597552.1	=	NC_043982.1	0
Chromosome 4	LR597553.1	=	NC_043983.1	0
Chromosome 5	LR597554.1	=	NC_043984.1	0
Chromosome 6	LR597555.1	=	NC_043985.1	0
Chromosome 7	LR597556.1	=	NC_043986.1	0
Chromosome 8	LR597557.1	=	NC_043987.1	0
Chromosome 9	LR597558.1	=	NC_043988.1	0
Chromosome 10	LR597559.1	=	NC_043989.1	0
Chromosome 11	LR597560.1	=	NC_043990.1	0
Chromosome 12	LR597561.1	=	NC_043991.1	0
Chromosome 13	LR597562.1	=	NC_043992.1	0
Chromosome 14	LR597563.1	=	NC_043993.1	0
Chromosome 15	LR597564.1	=	NC_043994.1	0
Chromosome 16	LR597565.1	=	NC_043995.1	0
Chromosome 17	LR597566.1	=	NC_043996.1	0
Chromosome 18	LR597567.1	=	NC_043997.1	0
Chromosome 19	LR597568.1	=	NC_043998.1	0
Chromosome 20	LR597569.1	=	NC_043999.1	0
Chromosome 21	LR597570.1	=	NC_044000.1	0
Chromosome 22	LR597571.1	=	NC_044001.1	0
Chromosome 23	LR597572.1	=	NC_044002.1	0
Chromosome 24	LR597573.1	=	NC_044003.1	0
unplaced	n/a	n/a	n/a	63

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	835,254,674	87	833,388,842	34,950,760	253
Chromosome 1	42,201,344	1	42,199,931	42,201,344	11
Chromosome 2	21,229,906	1	21,227,205	21,229,906	12
Chromosome 3	47,119,472	1	47,117,646	47,119,472	11
Chromosome 4	36,530,440	1	36,529,240	36,530,440	7
Chromosome 5	39,210,961	1	39,209,548	39,210,961	9
Chromosome 6	35,357,120	1	35,356,320	35,357,120	7
Chromosome 7	34,918,058	1	34,915,871	34,918,058	8
Chromosome 8	36,448,408	1	36,446,608	36,448,408	9
Chromosome 9	38,390,726	1	38,371,693	38,390,726	13
Chromosome 10	34,950,760	1	34,948,682	34,950,760	4
Chromosome 11	31,823,041	1	31,573,864	31,823,041	14
Chromosome 12	32,414,123	1	32,197,834	32,414,123	12
Chromosome 13	42,404,719	1	42,403,019	42,404,719	7
Chromosome 14	39,034,921	1	39,033,221	39,034,921	9
Chromosome 15	33,424,759	1	33,424,059	33,424,759	7
Chromosome 16	34,798,541	1	34,788,392	34,798,541	8
Chromosome 17	35,810,529	1	35,587,136	35,810,529	9
Chromosome 18	29,228,082	1	28,946,638	29,228,082	20
Chromosome 19	28,934,276	1	28,601,337	28,934,276	17
Chromosome 20	29,743,470	1	29,741,032	29,743,470	14
Chromosome 21	33,919,319	1	33,918,619	33,919,319	3
Chromosome 22	31,899,175	1	31,841,912	31,899,175	13
Chromosome 23	28,196,746	1	28,194,747	28,196,746	10
Chromosome 24	33,539,878	1	33,091,712	33,539,878	9
unplaced	3,725,900	63	3,722,576	82,365	10

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fMyrMur1.1

See Genome Information for Myripristis murdjan

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

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