U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Rumen uncultured genome RUG11549

Organism name:
Fibrobacter succinogenes (bacteria)
Taxonomy check:
Inconclusive
Isolate:
RUG11549
BioSample:
SAMEA6149684
BioProject:
PRJEB31266
Submitter:
THE ROSLIN INSTITUTE
Date:
2020/02/17
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • annotation fails MAG completeness check
  • derived from metagenome
GenBank assembly accession:
GCA_902770285.1 (latest)
RefSeq assembly accession:
GCF_902770285.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CACXSR01
Genome coverage:
30x

IDs: 6017821 [UID] 17159208 [GenBank] 19957608 [RefSeq]

See Genome Information for Fibrobacter succinogenes

Pathogen Detection Resources

There are 49 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,405,642
Total ungapped length3,404,389
Gaps between scaffolds0
Number of scaffolds468
Scaffold N509,575
Scaffold L50110
Number of contigs494
Contig N509,287
Contig L50114
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)468

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,405,6424683,404,3899,575260

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Fibrobacter succinogenesFibrobacter succinogenes

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003149165.1Fibrobacter succinogenes subsp. elongatustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003149165.1Fibrobacter succinogenestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type89.6158.9257.13
Best-match type89.6158.9257.13

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna