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Rumen uncultured genome RUG14609

Organism name:
Fibrobacter succinogenes (bacteria)
Taxonomy check:
Inconclusive
Isolate:
RUG14609
BioSample:
SAMEA6152748
BioProject:
PRJEB31266
Submitter:
THE ROSLIN INSTITUTE
Date:
2020/02/17
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • annotation fails MAG completeness check
  • derived from metagenome
GenBank assembly accession:
GCA_902800815.1 (latest)
RefSeq assembly accession:
GCF_902800815.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CADCGB01
Genome coverage:
30x

IDs: 6058551 [UID] 17244388 [GenBank] 20040818 [RefSeq]

See Genome Information for Fibrobacter succinogenes

Pathogen Detection Resources

There are 49 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,150,393
Total ungapped length3,150,339
Gaps between scaffolds0
Number of scaffolds64
Scaffold N5086,732
Scaffold L5011
Number of contigs67
Contig N5085,671
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)64

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,150,393643,150,33986,73230

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Fibrobacter succinogenesFibrobacter succinogenes

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003149165.1Fibrobacter succinogenes subsp. elongatustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003149165.1Fibrobacter succinogenestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type84.5112.5911.30
Best-match type84.5112.5911.30

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna