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iyVesCrab1.2

Organism name:
Vespa crabro (European hornet)
BioSample:
SAMEA7520500
BioProject:
PRJEB45335
Submitter:
WELLCOME SANGER INSTITUTE
Date:
2022/02/09
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_910589235.2 (latest)
RefSeq assembly accession:
GCF_910589235.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
CAJUUB02
Genome coverage:
70x

IDs: 12133631 [UID] 31798628 [GenBank] 32002498 [RefSeq]

See Genome Information for Vespa crabro

There are 3 assemblies for this organism

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History (Show revision history)

Comment

The assembly iyVesCrab1.2 is based on 70x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation ... with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size.  more

Global statistics

Total sequence length229,313,526
Total ungapped length229,285,326
Gaps between scaffolds0
Number of scaffolds99
Scaffold N509,767,562
Scaffold L508
Number of contigs207
Contig N502,980,993
Contig L5025
Total number of chromosomes and plasmids25
Number of component sequences (WGS or clone)99

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_910589234.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1OU342400.1=NC_060955.10
Chromosome 2OU342401.1=NC_060956.10
Chromosome 3OU342402.1=NC_060957.10
Chromosome 4OU342403.1=NC_060958.10
Chromosome 5OU342404.1=NC_060959.10
Chromosome 6OU342405.1=NC_060960.10
Chromosome 7OU342406.1=NC_060961.10
Chromosome 8OU342407.1=NC_060962.10
Chromosome 9OU342408.1=NC_060963.10
Chromosome 10OU342409.1=NC_060964.10
Chromosome 11OU342410.1=NC_060965.10
Chromosome 12OU342411.1=NC_060966.10
Chromosome 13OU342412.1=NC_060967.10
Chromosome 14OU342413.1=NC_060968.10
Chromosome 15OU342414.1=NC_060969.10
Chromosome 16OU342415.1=NC_060970.10
Chromosome 17OU342416.1=NC_060971.10
Chromosome 18OU342417.1=NC_060972.10
Chromosome 19OU342418.1=NC_060973.10
Chromosome 20OU342419.1=NC_060974.10
Chromosome 21OU342420.1=NC_060975.10
Chromosome 22OU342421.1=NC_060976.10
Chromosome 23OU342422.1=NC_060977.10
Chromosome 24OU342423.1=NC_060978.10
Chromosome 25OU342424.1=NC_060979.10
unplacedn/an/an/a74

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All229,313,52699229,285,3269,767,5621080
Chromosome 124,517,513124,513,81324,517,513140
Chromosome 222,543,840122,541,84022,543,84070
Chromosome 314,875,005114,873,50514,875,00560
Chromosome 412,120,248112,117,74812,120,248110
Chromosome 512,043,257112,041,75712,043,25760
Chromosome 611,602,847111,602,44711,602,84720
Chromosome 710,993,119110,992,31910,993,11940
Chromosome 89,767,56219,766,9629,767,56230
Chromosome 99,213,25919,213,2599,213,25900
Chromosome 108,840,51118,839,3118,840,51160
Chromosome 118,621,17018,619,8708,621,17050
Chromosome 126,643,62016,642,9206,643,62020
Chromosome 136,368,21716,364,7176,368,217130
Chromosome 145,954,70515,954,1055,954,70530
Chromosome 155,840,98015,839,6805,840,98050
Chromosome 165,785,95615,784,5565,785,95640
Chromosome 175,722,15815,721,6585,722,15810
Chromosome 185,290,27115,289,0715,290,27130
Chromosome 195,273,32015,273,3205,273,32000
Chromosome 204,918,69814,918,4984,918,69810
Chromosome 214,871,71314,870,6134,871,71340
Chromosome 224,447,69414,446,7944,447,69430
Chromosome 234,322,27714,322,2774,322,27700
Chromosome 243,717,98713,717,5873,717,98720
Chromosome 253,645,99613,645,5963,645,99620
unplaced11,371,6037411,371,1036,117,33610