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IDs: 20238841 [UID] 51219148 [GenBank] 52772708 [RefSeq]
The assembly fSarPil1.1 is based on 33x PacBio data and Arima2 Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation ... with purge_dups, and Hi-C based scaffolding with YaHS. The mitochondrial genome was assembled using MitoHiFi. Finally, the primary assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. There are large haplotype inversions on the following chromosomes: Chromosome 5 from 4.03-31.1Mb, Chromosome 8 from 6.87-30.93Mb, Chromosome 9 from 4.98-33.85Mb, Chromosome 15 from 3.26-29.76, Chromosome 17 - a double inversion from 17.96-30.93. ALT assembly has been assembled into chromosomes as a merged assembly of both haplotypes was used for curation. more
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