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ASM333624v1

Organism name:
Haloplanus salinus (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: JCM 18368
BioSample:
SAMN09684816
BioProject:
PRJNA481615
Submitter:
World Institute of Kimchi
Date:
2018/07/23
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003336245.1 (latest)
RefSeq assembly accession:
GCF_003336245.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QPHM01
Assembly method:
PacBio SMRT Analysis v. 2.3.0
Expected final version:
yes
Genome coverage:
268.92x
Sequencing technology:
PacBio

IDs: 1832281 [UID] 6935288 [GenBank] 6953538 [RefSeq]

See Genome Information for Haloplanus salinus

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/18/2018 11:32:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,593
CDS (total)::3,523
Genes (coding)::3,357
CDS (coding)::3,357
Genes (RNA)::70
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::62
ncRNAs::2
Pseudo Genes (total)::166
Pseudo Genes (ambiguous residues)::0 of 166
Pseudo Genes (frameshifted)::67 of 166
Pseudo Genes (incomplete)::102 of 166
Pseudo Genes (internal stop)::21 of 166
Pseudo Genes (multiple problems)::24 of 166
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,549,098
Total ungapped length3,549,098
Number of contigs4
Contig N502,969,394
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,549,09843,549,0982,969,39400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Haloplanus salinusHaloplanus salinus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003342675.1Haloplanus rubicundustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.2968.4164.34

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected