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ASM160394v1

Organism name:
Clostridiales bacterium Firm_03 (firmicutes)
Taxonomy check:
Inconclusive
Isolate:
Firm_03
BioSample:
SAMN03837539
BioProject:
PRJNA284316
Submitter:
University of Queensland
Date:
2016/03/30
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • fragmented assembly
  • genus undefined
GenBank assembly accession:
GCA_001603945.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LVAI01
Assembly method:
CLC NGS Cell v. 6
Expected final version:
yes
Genome coverage:
38.0x
Sequencing technology:
Illumina HiSeq

IDs: 712621 [UID] 3151548 [GenBank]

See Genome Information for Clostridiales bacterium Firm_03

History (Show revision history)

Comment

Global statistics

Total sequence length2,377,232
Total ungapped length2,377,108
Gaps between scaffolds0
Number of scaffolds684
Scaffold N504,919
Scaffold L50143
Number of contigs688
Contig N504,843
Contig L50144
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)684

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,377,2326842,377,1084,91940

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridiales bacterium Firm_03Clostridiales bacterium Firm_03

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004768785.1Caproiciproducens galactitolivoranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.110.790.73

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena