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ASM146920v1

Organism name:
Pseudoalteromonas sp. H103 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: H103
BioSample:
SAMN04293675
BioProject:
PRJNA209414
Submitter:
University of Arizona
Date:
2015/12/17
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001469205.1 (latest)
RefSeq assembly accession:
GCF_001469205.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LOFG01
Assembly method:
AllPaths v. July-2013; Velvet v. 1.1.07
Expected final version:
yes
Genome coverage:
167.8x
Sequencing technology:
Illumina GAII

IDs: 596131 [UID] 2725828 [GenBank] 2728498 [RefSeq]

See Genome Information for Pseudoalteromonas sp. H103

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::12/09/2015 13:10:35
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::3,920
CDS::3,790
Pseudo Genes::37
rRNAs::9, 8, 4 (5S, 16S, 23S)
complete rRNAs::9 (5S)
partial rRNAs::8, 4 (16S, 23S)
tRNAs::71
ncRNAs::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,416,433
Total ungapped length4,416,413
Gaps between scaffolds0
Number of scaffolds21
Scaffold N50477,384
Scaffold L504
Number of contigs23
Contig N50458,979
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)21

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,416,433214,416,413477,38420

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudoalteromonas sp. H103Pseudoalteromonas sp. H103

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900239935.1Pseudoalteromonas carrageenovoratype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.6392.9889.57

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna