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ASM179750v1

Organism name:
Deltaproteobacteria bacterium GWC2_56_8 (d-proteobacteria)
Taxonomy check:
Inconclusive
BioSample:
SAMN04313914
BioProject:
PRJNA288027
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2016/10/20
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001797505.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MGPU01
Assembly method:
IDBA_UD v. 06.01.2014s
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq2000

IDs: 831691 [UID] 3554008 [GenBank]

See Genome Information for Deltaproteobacteria bacterium GWC2_56_8

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/08/2016 08:08:21
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,996
CDS (total)::1,964
Genes (coding)::1,461
CDS (coding)::1,461
Genes (RNA)::32
rRNAs::
complete rRNAs::
partial rRNAs::
tRNAs::29
ncRNAs::3
Pseudo Genes (total)::503
Pseudo Genes (ambiguous residues)::278 of 503
Pseudo Genes (frameshifted)::33 of 503
Pseudo Genes (incomplete)::259 of 503
Pseudo Genes (internal stop)::3 of 503
Pseudo Genes (multiple problems)::70 of 503
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,955,540
Total ungapped length1,928,730
Gaps between scaffolds0
Number of scaffolds179
Scaffold N5012,065
Scaffold L5056
Number of contigs694
Contig N505,074
Contig L50128
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)179

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,955,5401791,928,73012,0655150

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Deltaproteobacteria bacterium GWC2_56_8Deltaproteobacteria bacterium GWC2_56_8

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013340205.1Anaeromyxobacter diazotrophicustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type73.070.030.01

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena