U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM296681v1

Organism name:
Stenotrophomonas sp. MYb57 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MYb57
BioSample:
SAMN07581406
BioProject:
PRJNA400855
Submitter:
Zoological Institute, Kiel University
Date:
2018/03/02
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002966815.1 (latest)
RefSeq assembly accession:
GCF_002966815.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SPAdes v. 3.8.0
Expected final version:
yes
Genome coverage:
297x
Sequencing technology:
Illumina HiSeq

IDs: 1611991 [UID] 6149278 [GenBank] 6175538 [RefSeq]

See Genome Information for Stenotrophomonas sp. MYb57

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_002966815.1-RS_2024_05_05
Annotation Date::05/05/2024 23:20:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,265
CDSs (total)::4,177
Genes (coding)::4,159
CDSs (with protein)::4,159
Genes (RNA)::88
rRNAs::5, 4, 4 (5S, 16S, 23S)
complete rRNAs::5, 4, 4 (5S, 16S, 23S)
tRNAs::71
ncRNAs::4
Pseudo Genes (total)::18
CDSs (without protein)::18
Pseudo Genes (ambiguous residues)::0 of 18
Pseudo Genes (frameshifted)::8 of 18
Pseudo Genes (incomplete)::14 of 18
Pseudo Genes (internal stop)::1 of 18
Pseudo Genes (multiple problems)::4 of 18
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,694,453
Total ungapped length4,694,453
Total number of chromosomes and plasmids1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002966825.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP023271.1=NZ_CP023271.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,694,453

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Stenotrophomonas sp. MYb57Stenotrophomonas sp. MYb57

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002750975.1Stenotrophomonas indicatrixtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.3790.3793.07

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna