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ASM180630v1

Organism name:
Stenotrophomonas sp. LM091 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: LM091
BioSample:
SAMN05818440
BioProject:
PRJNA344031
Submitter:
cirad
Date:
2016/10/21
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001806305.1 (latest)
RefSeq assembly accession:
GCF_001806305.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT Analysis HGAP v. 2.3 protocol
Genome coverage:
229x
Sequencing technology:
PacBio RSII

IDs: 836051 [UID] 3562778 [GenBank] 3611968 [RefSeq]

See Genome Information for Stenotrophomonas sp. LM091

History (Show revision history)

Comment

Source DNA is available from the CIRAD research center collection: 7 ch. de l'IRAT, 97410 Saint-Pierre, Reunion
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_001806305.1-RS_2024_05_05
Annotation Date::05/05/2024 20:10:53
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,881
CDSs (total)::3,798
Genes (coding)::3,734
CDSs (with protein)::3,734
Genes (RNA)::83
rRNAs::4, 3, 3 (5S, 16S, 23S)
complete rRNAs::4, 3, 3 (5S, 16S, 23S)
tRNAs::69
ncRNAs::4
Pseudo Genes (total)::64
CDSs (without protein)::64
Pseudo Genes (ambiguous residues)::0 of 64
Pseudo Genes (frameshifted)::41 of 64
Pseudo Genes (incomplete)::29 of 64
Pseudo Genes (internal stop)::1 of 64
Pseudo Genes (multiple problems)::7 of 64
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,317,450
Total ungapped length4,317,450
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001806315.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP017483.1=NZ_CP017483.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,317,450

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Stenotrophomonas sp. LM091Stenotrophomonas sp. LM091

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000661955.1Stenotrophomonas rhizophilasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.4469.7064.76

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna