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LMG29880

Organism name:
Gilliamella mensalis (g-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
2
BioSample:
SAMEA4516761
BioProject:
PRJEB16314
Submitter:
Jessy
Date:
2017/04/14
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_900103085.1 (latest)
RefSeq assembly accession:
GCF_900103085.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FMWR01
Genome coverage:
400x

IDs: 1076511 [UID] 4389748 [GenBank] 4404738 [RefSeq]

See Genome Information for Gilliamella mensalis

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length2,281,807
Total ungapped length2,281,723
Gaps between scaffolds0
Number of scaffolds44
Scaffold N50167,669
Scaffold L506
Number of contigs46
Contig N50167,669
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)44

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,281,807442,281,723167,66920

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Gilliamella mensalisGilliamella mensalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900094945.1Gilliamella bombicolatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.3973.6572.53

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna