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Source database (GenBank or RefSeq) File type

ASM202109v1

Organism name:: Solemya elarraichensis gill symbiont (g-proteobacteria)
Taxonomy check:: Inconclusive
Infraspecific name:: Specimen-voucher: Malacology 379147
Isolate:: Se-Cadez
BioSample:: SAMN06016298
BioProject:: PRJNA353273
Submitter:: Harvard University
Date:: 2017/03/06
Assembly type:: na
Assembly level:: Contig
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_002021095.1 (latest)
RefSeq assembly accession:: GCF_002021095.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: MPRK01
Assembly method:: IDBA v. 1.1.1
Expected final version:: no
Genome coverage:: 22.0x
Sequencing technology:: Illumina HiSeq

IDs: 1020411 [UID] 4184268 [GenBank] 4191018 [RefSeq]

See Genome Information for Solemya elarraichensis gill symbiont

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History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002021095.1	=	GCF_002021095.1	ASM202109v1	Contig	Latest GenBank, Latest RefSeq

Comment


Bacteria and source DNA available from Cavanaugh Lab, OEB Dept., Harvard University.

This genome was originally misidentified as Solemya pervernicosa gill symbiont Sp-SM6. It was corrected to Solemya elarraichensis gill symbiont Se-Cadez on 08-APR-2019.

Annotation was added by the NCBI Prokaryotic ... Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::11/21/2016 17:51:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,232
CDS (total)::2,192
Genes (coding)::2,131
CDS (coding)::2,131
Genes (RNA)::40
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::33
ncRNAs::4
Pseudo Genes (total)::61
Pseudo Genes (ambiguous residues)::0 of 61
Pseudo Genes (frameshifted)::31 of 61
Pseudo Genes (incomplete)::17 of 61
Pseudo Genes (internal stop)::16 of 61
Pseudo Genes (multiple problems)::3 of 61
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,047,614
Total ungapped length	2,047,614
Number of contigs	378
Contig N50	8,157
Contig L50	76
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	378

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	89.42	0.25	0.15

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ASM202109v1

See Genome Information for Solemya elarraichensis gill symbiont

Pathogen Detection Resources

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