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ASM205027v1

Organism name:
Anaerolineae bacterium UTCFX1 (GNS bacteria)
Taxonomy check:
Inconclusive
Isolate:
UTCFX1
BioSample:
SAMN06342765
BioProject:
PRJNA343219
Submitter:
University of Wisconsin - Madison
Date:
2017/03/20
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002050275.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MWTB01
Assembly method:
CLC NGS Cell v. 7.0.3
Expected final version:
yes
Genome coverage:
24x
Sequencing technology:
Illumina HiSeq

IDs: 1043011 [UID] 4262438 [GenBank]

See Genome Information for Anaerolineae bacterium UTCFX1

Pathogen Detection Resources

History (Show revision history)

Comment

Genome was manually curated based on annotation generated by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/22/2017 12:12:21
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,614
CDS (total)::2,564
Genes (coding)::2,550
CDS (coding)::2,550
Genes (RNA)::50
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1, 1 (16S, 23S)
tRNAs::43
ncRNAs::4
Pseudo Genes (total)::14
Pseudo Genes (ambiguous residues)::0 of 14
Pseudo Genes (frameshifted)::4 of 14
Pseudo Genes (incomplete)::7 of 14
Pseudo Genes (internal stop)::4 of 14
Pseudo Genes (multiple problems)::1 of 14
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,777,515
Total ungapped length2,777,206
Gaps between scaffolds0
Number of scaffolds34
Scaffold N50125,597
Scaffold L505
Number of contigs36
Contig N50117,047
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)34

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,777,515342,777,206125,59720

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Anaerolineae bacterium UTCFX1Anaerolineae bacterium UTCFX1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_901482635.1Staphylococcus capitistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.830.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena