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Source database (GenBank or RefSeq) File type

ASM227979v1

Organism name:

Hydrogenophilales bacterium 12-61-10 (proteobacteria)

Taxonomy check:

Inconclusive

Isolate:

12-61-10

BioSample:

SAMN06622391

BioProject:

PRJNA379596

Submitter:

None

Date:

2017/08/16

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

derived from metagenome
genus undefined

GenBank assembly accession:

GCA_002279795.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

NCCT01

Assembly method:

idba_ud v. 1

Expected final version:

yes

Genome coverage:

10x

Sequencing technology:

Illumina HiSeq

IDs: 1186281 [UID] 4980678 [GenBank]

See Genome Information for Hydrogenophilales bacterium 12-61-10

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002279795.1	n/a	n/a	ASM227979v1	Scaffold	Latest GenBank

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::04/07/2017 16:58:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,152
CDS (total)::3,105
Genes (coding)::2,951
CDS (coding)::2,951
Genes (RNA)::47
rRNAs::1 (16S)
complete rRNAs:: 
partial rRNAs::1 (16S)
tRNAs::41
ncRNAs::5
Pseudo Genes (total)::154
Pseudo Genes (ambiguous residues)::18 of 154
Pseudo Genes (frameshifted)::101 of 154
Pseudo Genes (incomplete)::41 of 154
Pseudo Genes (internal stop)::13 of 154
Pseudo Genes (multiple problems)::18 of 154
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,023,741
Total ungapped length	3,021,887
Gaps between scaffolds	0
Number of scaffolds	160
Scaffold N50	29,685
Scaffold L50	31
Number of contigs	193
Contig N50	28,065
Contig L50	33
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	160

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	82.99	34.82	29.15

Assembly

Genome Assembly

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ASM227979v1

See Genome Information for Hydrogenophilales bacterium 12-61-10

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result