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ASM278975v1

Organism name:
Candidatus Atribacteria bacterium CG_4_9_14_3_um_filter_33_16 (bacteria)
Taxonomy check:
Inconclusive
Isolate:
CG_4_9_14_3_um_filter_33_16
BioSample:
SAMN06660046
BioProject:
PRJNA362739
Submitter:
DOE Joint Genome Institute
Date:
2017/11/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002789755.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PFTV01
Assembly method:
IDBA-UD v. 02.2016
Expected final version:
yes
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq

IDs: 1448481 [UID] 5670678 [GenBank]

See Genome Information for Candidatus Atribacteria bacterium CG_4_9_14_3_um_filter_33_16

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/08/2017 07:49:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,640
CDS (total)::1,596
Genes (coding)::1,562
CDS (coding)::1,562
Genes (RNA)::44
rRNAs::1 (16S)
complete rRNAs::1 (16S)
tRNAs::40
ncRNAs::3
Pseudo Genes (total)::34
Pseudo Genes (ambiguous residues)::9 of 34
Pseudo Genes (frameshifted)::10 of 34
Pseudo Genes (incomplete)::13 of 34
Pseudo Genes (internal stop)::4 of 34
Pseudo Genes (multiple problems)::2 of 34
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,612,219
Total ungapped length1,611,130
Gaps between scaffolds0
Number of scaffolds209
Scaffold N5011,709
Scaffold L5042
Number of contigs232
Contig N5011,293
Contig L5044
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)209

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,612,2192091,611,13011,709230

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Atribacteria bacterium CG_4_9_14_3_um_filter_33_16Candidatus Atribacteria bacterium CG_4_9_14_3_um_filter_33_16

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_901482635.1Staphylococcus capitistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.080.080.05

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena