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Source database (GenBank or RefSeq) File type

ASM279273v1

Organism name:

bacterium CG_4_10_14_0_2_um_filter_33_32 (bacteria)

Taxonomy check:

Inconclusive

Isolate:

CG_4_10_14_0_2_um_filter_33_32

BioSample:

SAMN06659745

BioProject:

PRJNA362739

Submitter:

DOE Joint Genome Institute

Date:

2017/11/16

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

derived from metagenome
genus undefined

GenBank assembly accession:

GCA_002792735.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

PFOW01

Assembly method:

IDBA-UD v. 02.2016

Expected final version:

yes

Genome coverage:

10x

Sequencing technology:

Illumina HiSeq

IDs: 1449991 [UID] 5673688 [GenBank]

See Genome Information for bacterium CG_4_10_14_0_2_um_filter_33_32

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002792735.1	n/a	n/a	ASM279273v1	Scaffold	Latest GenBank

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::11/08/2017 03:33:20
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,019
CDS (total)::976
Genes (coding)::968
CDS (coding)::968
Genes (RNA)::43
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::38
ncRNAs::2
Pseudo Genes (total)::8
Pseudo Genes (ambiguous residues)::1 of 8
Pseudo Genes (frameshifted)::1 of 8
Pseudo Genes (incomplete)::3 of 8
Pseudo Genes (internal stop)::3 of 8
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	907,487
Total ungapped length	907,240
Gaps between scaffolds	0
Number of scaffolds	81
Scaffold N50	17,382
Scaffold L50	15
Number of contigs	86
Contig N50	17,382
Contig L50	15
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	81

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	78.12	0.18	0.07

Assembly

Genome Assembly

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ASM279273v1

See Genome Information for bacterium CG_4_10_14_0_2_um_filter_33_32

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

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Global assembly definition

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result