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ASM283987v1

Organism name:
Gemmatimonadetes bacterium HGW-Gemmatimonadetes-1 (bacteria)
Taxonomy check:
Inconclusive
Isolate:
HGW-Gemmatimonadetes-1
BioSample:
SAMN06767725
BioProject:
PRJNA321556
Submitter:
UC Berkeley
Date:
2017/12/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • fragmented assembly
  • genus undefined
GenBank assembly accession:
GCA_002839875.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PGYW01
Assembly method:
IDBA-UD v. 03.2016
Expected final version:
yes
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq

IDs: 1490321 [UID] 5778928 [GenBank]

See Genome Information for Gemmatimonadetes bacterium HGW-Gemmatimonadetes-1

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/21/2017 10:27:22
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,245
CDS (total)::1,241
Genes (coding)::1,224
CDS (coding)::1,224
Genes (RNA)::4
rRNAs::1 (16S)
complete rRNAs::
partial rRNAs::1 (16S)
tRNAs::3
ncRNAs::0
Pseudo Genes (total)::17
Pseudo Genes (ambiguous residues)::1 of 17
Pseudo Genes (frameshifted)::3 of 17
Pseudo Genes (incomplete)::13 of 17
Pseudo Genes (internal stop)::0 of 17
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,061,535
Total ungapped length1,060,120
Gaps between scaffolds0
Number of scaffolds489
Scaffold N502,400
Scaffold L50149
Number of contigs499
Contig N502,371
Contig L50151
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)489

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,061,5354891,060,1202,400100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Gemmatimonadetes bacterium HGW-Gemmatimonadetes-1Gemmatimonadetes bacterium HGW-Gemmatimonadetes-1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000145235.1Micromonospora aurantiacatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type79.310.210.03

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena