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ASM283973v1

Organism name:
Candidatus Melainabacteria bacterium HGW-Melainabacteria-1 (bacteria)
Taxonomy check:
Inconclusive
Isolate:
HGW-Melainabacteria-1
BioSample:
SAMN06767732
BioProject:
PRJNA321556
Submitter:
UC Berkeley
Date:
2017/12/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002839735.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PGYP01
Assembly method:
IDBA-UD v. 03.2016
Expected final version:
yes
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq

IDs: 1490271 [UID] 5778818 [GenBank]

See Genome Information for Candidatus Melainabacteria bacterium HGW-Melainabacteria-1

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/21/2017 10:59:31
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,440
CDS (total)::4,397
Genes (coding)::4,345
CDS (coding)::4,345
Genes (RNA)::43
rRNAs::
complete rRNAs::
partial rRNAs::
tRNAs::40
ncRNAs::3
Pseudo Genes (total)::52
Pseudo Genes (ambiguous residues)::13 of 52
Pseudo Genes (frameshifted)::7 of 52
Pseudo Genes (incomplete)::31 of 52
Pseudo Genes (internal stop)::3 of 52
Pseudo Genes (multiple problems)::2 of 52
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,285,490
Total ungapped length4,280,356
Gaps between scaffolds0
Number of scaffolds818
Scaffold N506,599
Scaffold L50219
Number of contigs878
Contig N506,350
Contig L50235
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)818

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,285,4908184,280,3566,599600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Melainabacteria bacterium HGW-Melainabacteria-1Candidatus Melainabacteria bacterium HGW-Melainabacteria-1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009768935.1Rectinema subterraneumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.780.721.10

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena