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ASM278532v1

Organism name:
bacterium (Candidatus Howlettbacteria) CG_4_10_14_0_8_um_filter_40_9 (bacteria)
Taxonomy check:
Inconclusive
Isolate:
CG_4_10_14_0_8_um_filter_40_9
BioSample:
SAMN06659812
BioProject:
PRJNA362739
Submitter:
None
Date:
2017/11/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002785325.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PFMH01
Assembly method:
IDBA-UD v. 02.2016
Expected final version:
yes
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq

IDs: 1446221 [UID] 5666018 [GenBank]

See Genome Information for bacterium (Candidatus Howlettbacteria) CG_4_10_14_0_8_um_filter_40_9

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/08/2017 00:38:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::914
CDS (total)::880
Genes (coding)::859
CDS (coding)::859
Genes (RNA)::34
tRNAs::32
ncRNAs::2
Pseudo Genes (total)::21
Pseudo Genes (ambiguous residues)::11 of 21
Pseudo Genes (frameshifted)::4 of 21
Pseudo Genes (incomplete)::2 of 21
Pseudo Genes (internal stop)::4 of 21
##Genome-Annotation-Data-END##

Global statistics

Total sequence length817,806
Total ungapped length814,915
Gaps between scaffolds0
Number of scaffolds123
Scaffold N5010,900
Scaffold L5023
Number of contigs163
Contig N509,349
Contig L5027
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)123

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced817,806123814,91510,900400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
bacterium (Candidatus Howlettbacteria) CG_4_10_14_0_8_um_filter_40_9bacterium (Candidatus Howlettbacteria) CG_4_10_14_0_8_um_filter_40_9

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana