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ASM283603v1

Organism name:
Halomonas sp. MES3-P3E (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: MES3-P3E
BioSample:
SAMN08125773
BioProject:
PRJNA420923
Submitter:
University of Alaska Fairbanks
Date:
2017/12/12
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002836035.1 (latest)
RefSeq assembly accession:
GCF_002836035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PJBT01
Assembly method:
Unicycler v. 0.3.1
Expected final version:
no
Genome coverage:
57x
Sequencing technology:
Illumina MiSeq

IDs: 1488561 [UID] 5773438 [GenBank] 5793088 [RefSeq]

See Genome Information for Halomonas sp. MES3-P3E

History (Show revision history)

Comment

Bacteria available from Dr. Eric Collins, University of Alaska Fairbanks.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::12/07/2017 14:57:53
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,301
CDS (total)::4,230
Genes (coding)::4,121
CDS (coding)::4,121
Genes (RNA)::71
rRNAs::2, 2, 5 (5S, 16S, 23S)
complete rRNAs::2 (5S)
partial rRNAs::2, 5 (16S, 23S)
tRNAs::58
ncRNAs::4
Pseudo Genes (total)::109
Pseudo Genes (ambiguous residues)::0 of 109
Pseudo Genes (frameshifted)::50 of 109
Pseudo Genes (incomplete)::67 of 109
Pseudo Genes (internal stop)::32 of 109
Pseudo Genes (multiple problems)::32 of 109
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,487,593
Total ungapped length4,487,593
Number of contigs193
Contig N50117,862
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)193

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,487,5931934,487,593117,86200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Halomonas sp. MES3-P3EHalomonas sp. MES3-P3E

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013371085.1Vreelandella maristype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.7378.6778.06

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna