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ASM358164v1

Organism name:
Pelagerythrobacter aerophilus (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Ery1
BioSample:
SAMN09939628
BioProject:
PRJNA319016
Submitter:
Second Institute of Oceanography, State Oceanic Administration
Date:
2018/09/20
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003581645.1 (latest)
RefSeq assembly accession:
GCF_003581645.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QXFK01
Assembly method:
ABySS v. 1.9.0
Expected final version:
yes
Genome coverage:
300x
Sequencing technology:
Illumina HiSeq

IDs: 1985461 [UID] 7472078 [GenBank] 7484528 [RefSeq]

See Genome Information for Pelagerythrobacter aerophilus

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/31/2018 16:43:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,535
CDS (total)::3,484
Genes (coding)::3,426
CDS (coding)::3,426
Genes (RNA)::51
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::58
Pseudo Genes (ambiguous residues)::0 of 58
Pseudo Genes (frameshifted)::18 of 58
Pseudo Genes (incomplete)::43 of 58
Pseudo Genes (internal stop)::5 of 58
Pseudo Genes (multiple problems)::5 of 58
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,653,105
Total ungapped length3,653,105
Number of contigs19
Contig N50636,049
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)19

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,653,105193,653,105636,04900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pelagerythrobacter aerophilusPelagerythrobacter aerophilus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004135625.1Pelagerythrobacter rhizovicinustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.6965.3679.39

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected