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ASM29996v1

Organism name:
Cycloclasticus sp. P1 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: P1; MCCC 1A01040
BioSample:
SAMN02603953
BioProject:
PRJNA85601
Submitter:
The Third Institute of State Oceanic Administration (SOA)
Date:
2012/09/28
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000299965.1 (latest)
RefSeq assembly accession:
GCF_000299965.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 429388 [UID] 428078 [GenBank] 429388 [RefSeq]

See Genome Information for Cycloclasticus sp. P1

History (Show revision history)

Comment

Bacteria available from Dr. Zongze Shao; Adress: The Third Institute of State Oceanic Administration (SOA), Daxue Road 184#, Xiamen 361005, Fujian,P.R.China. E-mail:shaozz@163.com.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found ... here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::08/02/2023 01:00:21
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,296
CDSs (total)::2,254
Genes (coding)::2,249
CDSs (with protein)::2,249
Genes (RNA)::42
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::35
ncRNAs::4
Pseudo Genes (total)::5
CDSs (without protein)::5
Pseudo Genes (ambiguous residues)::0 of 5
Pseudo Genes (frameshifted)::2 of 5
Pseudo Genes (incomplete)::3 of 5
Pseudo Genes (internal stop)::0 of 5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,363,215
Total ungapped length2,363,215
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000299975.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP003230.1=NC_018697.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,363,215

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Cycloclasticus sp. P1Cycloclasticus sp. P1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000384415.1Cycloclasticus pugetiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.0294.3893.56

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna