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ASM17519v1

Organism name:
Actinobacillus minor NM305 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NM305
BioSample:
SAMN02470284
BioProject:
PRJNA36657
Submitter:
McGill University
Date:
2009/06/19
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000175195.1 (latest)
RefSeq assembly accession:
GCF_000175195.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ACQL01

IDs: 218478 [UID] 218458 [GenBank] 218478 [RefSeq]

See Genome Information for Actinobacillus minor

Pathogen Detection Resources

There are 7 assemblies for this organism

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History (Show revision history)

Comment

Actinobacillus minor strain NM305 is available from Centre de Ressources Biologiques de l'Institut Pasteur (Paris, France).
Genome was manually curated based on annotation generated by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found ... here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html.
Genome Coverage: 625x
Sequencing Technology: Solexa  more

Global statistics

Total sequence length2,425,264
Total ungapped length2,425,264
Number of contigs197
Contig N5067,819
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)197

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,425,2641972,425,26467,81900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Actinobacillus minor NM305Actinobacillus minor

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900773985.1Actinobacillus porcinustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.7711.0611.78

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected