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ASM42102v1

Organism name:
Lachnobacterium bovis NK4B19 (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NK4B19
BioSample:
SAMN02440897
BioProject:
PRJNA185713
Submitter:
DOE Joint Genome Institute
Date:
2013/07/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000421025.1 (latest)
RefSeq assembly accession:
GCF_000421025.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ATWB01
Assembly method:
Unknown program v. before 2013-05-07
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 40291 [UID] 729428 [GenBank] 849138 [RefSeq]

See Genome Information for Lachnobacterium bovis

There are 7 assemblies for this organism

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History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1012668
Source DNA and Organism available from William Kelly (bill.kelly@agresearch.co.nz)
Source DNA available from William Kelly (bill.kelly@agresearch.co.nz)
Organism available from William Kelly (bill.kelly@agresearch.co.nz)
Contacts: William Kelly (bill.kelly@agresearch.co.nz)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Lachnobacterium bovis NK4B19
sequencing_meth::WGS
GOLD Stamp ID::Gi22293
Gram Staining::Gram+
##MIGS-Data-END##

Global statistics

Total sequence length2,514,800
Total ungapped length2,514,800
Number of contigs130
Contig N5048,240
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)130

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,514,8001302,514,80048,24000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lachnobacterium bovis NK4B19Lachnobacterium bovis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900107245.1Lachnobacterium bovis DSM 14045suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900107245.1Lachnobacterium bovissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type86.3356.4152.35
Best-match type86.3356.4152.35

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna