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Genome Information for Alligator mississippiensis
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The American alligator (Alligator mississippiensis) is a large crocodilian reptile native to the Southeastern United States. It is one of the two extant species in the genus Alligator, the other being the Chinese alligator. This sample is from a female collected by Christopher Murray, coordinated by Brian Crother at Southeastern Louisiana University, to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis.
| Accession | PRJNA1008637 |
| Type | Umbrella project |
| Organism | Alligator mississippiensis[Taxonomy ID: 8496] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator; Alligator mississippiensis |
| Submission | Registration date: 23-Aug-2023
Vertebrate Genomes Project |
| Relevance | Reference genome |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 60982 |
| WGS master | 2 |
| Transcript | 60754 |
| SRA Experiments | 17 |
| Protein Sequences | 48027 |
| Publications |
| PubMed | 3 |
| PMC | 1 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds SRA or Trace Total |
2
1
1
4
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA1006701 | Chromosomes | Alligator mississippiensis | Alligator mississippiensis (American alligator) genome, rAllMis1, haplotype 2 (Vertebrate Genomes Project) | | PRJNA1006700 | Scaffolds | Alligator mississippiensis | Alligator mississippiensis (American alligator) genome, rAllMis1, haplotype 1 (Vertebrate Genomes Project) | | PRJNA1014489 | Chromosomes | Alligator mississippiensis | Alligator mississippiensis isolate:rAllMis1 RefSeq Genome sequencing and assembly (NCBI) | | PRJNA1145950 | SRA or Trace | Alligator mississippiensis (American alligator) genome, rAllMis1, sequence data | Alligator mississippiensis (American alligator) genome, rAllMis1, sequence data (Vertebrate Genomes Project) |
|