Alligator mississippiensis isolate:rAllMis1 (ID 1014489) - BioProject

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Accession: PRJNA1014489 ID: 1014489

Alligator mississippiensis isolate:rAllMis1 (American alligator)

Alligator mississippiensis isolate:rAllMis1 RefSeq Genome sequencing and assembly

See Genome Information for Alligator mississippiensis

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This project is a component of the Alligator mississippiensis (American alligator) genome, rAllMis1

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14 additional projects are related by organism.

3 additional projects are components of the Alligator mississippiensis (American alligator) genome, rAllMis1.

The reference sequence (RefSeq) genome assembly is derived from the submitted GenBank assembly (see linked project PRJNA1006701). Annotation provided on the RefSeq genomic records is based on NCBI annotation pipeline.

Accession	PRJNA1014489
Data Type	RefSeq Genome sequencing and assembly
Scope	Monoisolate
Organism	Alligator mississippiensis[Taxonomy ID: 8496] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator; Alligator mississippiensis
Publications (total 3) Less...	Rhie A et al., "Towards complete and error-free genome assemblies of all vertebrate species.", Nature, 2021 Apr;592(7856):737-746 More... Rhie A et al., "Towards complete and error-free genome assemblies of all vertebrate species.", Nature, 2021 Apr;592(7856):737-746 Nilsson MA et al., "Marsupial relationships and a timeline for marsupial radiation in South Gondwana.", Gene, 2004 Oct 13;340(2):189-96 Janke A et al., "The complete mitochondrial genome of Alligator mississippiensis and the separation between recent archosauria (birds and crocodiles).", Mol Biol Evol, 1997 Dec;14(12):1266-72 Less...
Submission	Registration date: 22-Aug-2023 Vertebrate Genomes Project - G10K - Rockefeller Vertebrate Genome Lab
Related Resources	Brian Crothers
Relevance	Reference genome
Locus Tag Prefix	RIU90

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	60964
Transcript	60754
Protein Sequences	48027
Publications
PubMed	3
PMC	1
Other datasets
BioSample	1
Assembly	1

Assembly details:

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Assembly	Level	WGS	Chrs	BioSample	Taxonomy
GCF_030867095.1	Chromosome	JAVFJH000000000	17	SAMN37045233	Alligator mississippiensis

Related GenBank Project

PRJNA1006701 : Alligator mississippiensis (American alligator) genome, rAllMis1, haplotype 2

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Alligator mississippiensis isolate:rAllMis1 (American alligator)

Alligator mississippiensis isolate:rAllMis1 RefSeq Genome sequencing and assembly

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