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The golden dust stingray (Potamotrygon marinae) is a species of stingray in the family Potamotrygonidae found in rivers in tropical and subtropical South America (from Wikipedia entry). This sample of a male individual found in French Guiana, was procured by Yann Guiguen and Julien Bobe to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing was conducted at the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco.
| Accession | PRJNA1125373 |
| Type | Umbrella project |
| Organism | Potamotrygon marinae[Taxonomy ID: 2803083] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Myliobatiformes; Potamotrygonidae; Potamotrygon; Potamotrygon marinae |
| Submission | Registration date: 18-Jun-2024
Vertebrate Genomes Project |
| Relevance | Reference Genome |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 14 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 2 |
This project encompasses the following 5 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : SRA or Trace No data links Total |
3
2
5
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA1107000 | No data links | Potamotrygon marinae | Potamotrygon marinae (golden dust stringray) genome, sPotMar1, haplotype 2 (Vertebrate Genomes Project) | | PRJNA1107001 | No data links | Potamotrygon marinae | Potamotrygon marinae (golden dust stringray) genome, sPotMar1, haplotype 1 (Vertebrate Genomes Project) | | PRJNA1142591 | SRA or Trace | Potamotrygon marinae (golden dust stringray) genome, sPotMar1, sequence data | Potamotrygon marinae (golden dust stringray) genome, sPotMar1, sequence data (Vertebrate Genomes Project) | | PRJNA1127673 | SRA or Trace | Potamotrygon marinae (golden dust stringray) transcriptome, sPotMar1 | Potamotrygon marinae (golden dust stringray) transcriptome, sPotMar1 (Vertebrate Genomes Project) | | PRJNA1127674 | SRA or Trace | Potamotrygon marinae (golden dust stringray) transcriptome, sPotMar2 | Potamotrygon marinae (golden dust stringray) transcriptome, sPotMar2 (Vertebrate Genomes Project) |
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