Escherichia coli (ID 312475) - BioProject

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Accession: PRJNA312475 ID: 312475

Escherichia coli

GenomeTrakr Project: FDA-CFSAN MDP Escherichia coli survey from foods

See Genome Information for Escherichia coli

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This project is a component of the GenomeTrakr umbrella project for Escherichia coli and Shigella sp.

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52 additional projects are components of the GenomeTrakr umbrella project for Escherichia coli and Shigella sp..

9218 additional projects are related by organism.

Whole genome sequencing of cultured E. coli as part of the US Food and Drug Administration surveillance project for the rapid detection of food contamination events.

Accession	PRJNA312475
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Submission	Registration date: 3-Apr-2020 FDA
Related Resources	FDA whole genome sequencing program
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	200
WGS master	198
Genomic DNA	2
SRA Experiments	222
Protein Sequences	4732
Other datasets
BioSample	203
Assembly	199
Supplementary data
Base modification	1

Assembly details:

Download

Assembly level

Number of Assemblies

Complete genome

Contig

Total

1
198
199

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_002105735.1		2	SAMN05414625	CFSAN051542	Escherichia coli
GCA_018094405.1	ABADZO000000000		SAMN05414492	CFSAN046647	Escherichia coli
GCA_018094385.1	ABADZN000000000		SAMN05414578	CFSAN046733	Escherichia coli
GCA_018094365.1	ABADZE000000000		SAMN05414587	CFSAN046742	Escherichia coli
GCA_018094345.1	ABADZI000000000		SAMN05414586	CFSAN046741	Escherichia coli
GCA_018094285.1	ABADZD000000000		SAMN05414588	CFSAN046743	Escherichia coli
GCA_020319395.1	ABCYZU000000000		SAMN10359124	CFSAN053339	Escherichia coli
GCA_015511255.1	AAXHHG000000000		SAMN05414490	CFSAN046645	Escherichia coli
GCA_016555955.1	AAYOYH000000000		SAMN10359131	CFSAN053346	Escherichia coli
GCA_016555925.1	AAYOYO000000000		SAMN10359121	CFSAN053336	Escherichia coli
GCA_012400035.1	AASKFK000000000		SAMN12730715	GN-609	Escherichia coli
GCA_012400005.1	AASKFS000000000		SAMN12730720	GN-1639	Escherichia coli
GCA_012399985.1	AASKFM000000000		SAMN12730722	GN-3020	Escherichia coli
GCA_012403365.1	AASKLU000000000		SAMN12730713	GN-444	Escherichia coli
GCA_012618795.1	AASXBL000000000		SAMN12730731	176	Escherichia coli
GCA_012618785.1	AASXBI000000000		SAMN12730717	GN-1036	Escherichia coli
GCA_012618765.1	AASXBE000000000		SAMN12730726	TOL 115A	Escherichia coli
GCA_012618685.1	AASXBG000000000		SAMN12730730	178	Escherichia coli
GCA_012625965.1	AASXNW000000000		SAMN12730725	TOL 102A	Escherichia coli
GCA_012454355.1	AASOCQ000000000		SAMN12730718	GN-1044	Escherichia coli
GCA_012454145.1	AASOCJ000000000		SAMN12730724	GN-3022	Escherichia coli
GCA_012453925.1	AASOCH000000000		SAMN12730721	GN-2933	Escherichia coli
GCA_012453685.1	AASOCK000000000		SAMN12730723	GN-3021	Escherichia coli
GCA_012453545.1	AASOCM000000000		SAMN12730714	GN-445	Escherichia coli
GCA_012453425.1	AASOCN000000000		SAMN12730716	GN-1035	Escherichia coli
GCA_012453345.1	AASOCP000000000		SAMN12730727	171	Escherichia coli
GCA_012410325.1	AASLAW000000000		SAMN12730728	172	Escherichia coli
GCA_012424305.1	AASLZU000000000		SAMN12730719	GN-1058	Escherichia coli
GCA_012664185.1	AASZOU000000000		SAMN05414537	CFSAN046692	Escherichia coli
GCA_012664205.1	AASZOQ000000000		SAMN05414539	CFSAN046694	Escherichia coli
GCA_012664165.1	AASZOR000000000		SAMN05414540	CFSAN046695	Escherichia coli
GCA_012664145.1	AASZOM000000000		SAMN05414543	CFSAN046698	Escherichia coli
GCA_012664125.1	AASZON000000000		SAMN05414541	CFSAN046696	Escherichia coli
GCA_012664085.1	AASZOS000000000		SAMN05414505	CFSAN046660	Escherichia coli
GCA_012663985.1	AASZOI000000000		SAMN05414534	CFSAN046689	Escherichia coli
GCA_012663965.1	AASZOV000000000		SAMN05414536	CFSAN046691	Escherichia coli
GCA_012663945.1	AASZOL000000000		SAMN05414542	CFSAN046697	Escherichia coli
GCA_012663885.1	AASZOF000000000		SAMN05414544	CFSAN046699	Escherichia coli
GCA_012663905.1	AASZOB000000000		SAMN05414545	CFSAN046700	Escherichia coli
GCA_012663865.1	AASZNV000000000		SAMN05414549	CFSAN046704	Escherichia coli
GCA_012663835.1	AASZNU000000000		SAMN05414550	CFSAN046705	Escherichia coli
GCA_012663825.1	AASZOE000000000		SAMN05414547	CFSAN046702	Escherichia coli
GCA_012663805.1	AASZOD000000000		SAMN05414548	CFSAN046703	Escherichia coli
GCA_012663775.1	AASZNP000000000		SAMN05414552	CFSAN046707	Escherichia coli
GCA_012663765.1	AASZNZ000000000		SAMN05414506	CFSAN046661	Escherichia coli
GCA_012663745.1	AASZNQ000000000		SAMN05414551	CFSAN046706	Escherichia coli
GCA_012663725.1	AASZNN000000000		SAMN05414555	CFSAN046710	Escherichia coli
GCA_012663705.1	AASZNW000000000		SAMN05414553	CFSAN046708	Escherichia coli
GCA_012663675.1	AASZNS000000000		SAMN05414557	CFSAN046712	Escherichia coli
GCA_012663665.1	AASZNX000000000		SAMN05414554	CFSAN046709	Escherichia coli
GCA_012663645.1	AASZNT000000000		SAMN05414558	CFSAN046713	Escherichia coli
GCA_012663625.1	AASZNJ000000000		SAMN05414559	CFSAN046714	Escherichia coli
GCA_012663605.1	AASZNB000000000		SAMN05414563	CFSAN046718	Escherichia coli
GCA_012663585.1	AASZNR000000000		SAMN05414556	CFSAN046711	Escherichia coli
GCA_012663565.1	AASZNO000000000		SAMN05414507	CFSAN046662	Escherichia coli
GCA_012663545.1	AASZNK000000000		SAMN05414560	CFSAN046715	Escherichia coli
GCA_012663525.1	AASZNL000000000		SAMN05414562	CFSAN046717	Escherichia coli
GCA_012663345.1	AASZNY000000000		SAMN05414546	CFSAN046701	Escherichia coli
GCA_012663105.1	AASZND000000000		SAMN05414564	CFSAN046719	Escherichia coli
GCA_012662945.1	AASZOY000000000		SAMN05414535	CFSAN046690	Escherichia coli
GCA_012662925.1	AASZNI000000000		SAMN05414561	CFSAN046716	Escherichia coli
GCA_012662865.1	AASZOT000000000		SAMN05414533	CFSAN046688	Escherichia coli
GCA_012643185.1	AASYOG000000000		SAMN05414501	CFSAN046656	Escherichia coli
GCA_012643165.1	AASYOC000000000		SAMN05414511	CFSAN046666	Escherichia coli
GCA_012643145.1	AASYOA000000000		SAMN05414601	CFSAN051517	Escherichia coli
GCA_012643125.1	AASYNX000000000		SAMN05414603	CFSAN051519	Escherichia coli
GCA_012643105.1	AASYNY000000000		SAMN05414602	CFSAN051518	Escherichia coli
GCA_012643085.1	AASYPL000000000		SAMN05414566	CFSAN046721	Escherichia coli
GCA_012643045.1	AASYNZ000000000		SAMN05414512	CFSAN046667	Escherichia coli
GCA_012643055.1	AASYPK000000000		SAMN05414569	CFSAN046724	Escherichia coli
GCA_012643025.1	AASYNV000000000		SAMN05414618	CFSAN051535	Escherichia coli
GCA_012643005.1	AASYNW000000000		SAMN05414620	CFSAN051537	Escherichia coli
GCA_012642965.1	AASYPA000000000		SAMN05414575	CFSAN046730	Escherichia coli
GCA_012642985.1	AASYPH000000000		SAMN05414568	CFSAN046723	Escherichia coli
GCA_012642805.1	AASYPB000000000		SAMN05414573	CFSAN046728	Escherichia coli
GCA_012642505.1	AASYPE000000000		SAMN05414572	CFSAN046727	Escherichia coli
GCA_012642585.1	AASYPI000000000		SAMN05414508	CFSAN046663	Escherichia coli
GCA_012643745.1	AASYPD000000000		SAMN05414576	CFSAN046731	Escherichia coli
GCA_012643725.1	AASYOY000000000		SAMN05414577	CFSAN046732	Escherichia coli
GCA_012643695.1	AASYOX000000000		SAMN05414579	CFSAN046734	Escherichia coli
GCA_012643685.1	AASYOU000000000		SAMN05414509	CFSAN046664	Escherichia coli
GCA_012643645.1	AASYOV000000000		SAMN05414580	CFSAN046735	Escherichia coli
GCA_012643665.1	AASYOZ000000000		SAMN05414581	CFSAN046736	Escherichia coli
GCA_012643625.1	AASYOS000000000		SAMN05414583	CFSAN046738	Escherichia coli
GCA_012643585.1	AASYOW000000000		SAMN05414584	CFSAN046739	Escherichia coli
GCA_012643565.1	AASYON000000000		SAMN05414585	CFSAN046740	Escherichia coli
GCA_012643595.1	AASYOT000000000		SAMN05414582	CFSAN046737	Escherichia coli
GCA_012643545.1	AASYOO000000000		SAMN05414590	CFSAN046745	Escherichia coli
GCA_012643505.1	AASYOJ000000000		SAMN05414591	CFSAN046746	Escherichia coli
GCA_012643515.1	AASYPJ000000000		SAMN05414565	CFSAN046720	Escherichia coli
GCA_012643485.1	AASYOP000000000		SAMN05414589	CFSAN046744	Escherichia coli
GCA_012643465.1	AASYOK000000000		SAMN05414510	CFSAN046665	Escherichia coli
GCA_012643425.1	AASYOI000000000		SAMN05414592	CFSAN046747	Escherichia coli
GCA_012643435.1	AASYOQ000000000		SAMN05414593	CFSAN046748	Escherichia coli
GCA_012643405.1	AASYOH000000000		SAMN05414594	CFSAN046749	Escherichia coli
GCA_012643385.1	AASYPF000000000		SAMN05414571	CFSAN046726	Escherichia coli
GCA_012643365.1	AASYOD000000000		SAMN05414598	CFSAN046753	Escherichia coli
GCA_012643345.1	AASYOR000000000		SAMN05414595	CFSAN046750	Escherichia coli
GCA_012643325.1	AASYOE000000000		SAMN05414599	CFSAN051515	Escherichia coli
GCA_012643305.1	AASYOM000000000		SAMN05414596	CFSAN046751	Escherichia coli
GCA_012643275.1	AASYOL000000000		SAMN05414597	CFSAN046752	Escherichia coli
GCA_012643265.1	AASYOF000000000		SAMN05414600	CFSAN051516	Escherichia coli
GCA_012643215.1	AASYOB000000000		SAMN05414502	CFSAN046657	Escherichia coli
GCA_012643225.1	AASYPC000000000		SAMN05414574	CFSAN046729	Escherichia coli
GCA_012643205.1	AASYPG000000000		SAMN05414567	CFSAN046722	Escherichia coli
GCA_012669145.1	AASZYL000000000		SAMN12730712	GN-295	Escherichia coli
GCA_012666565.1	AASZRQ000000000		SAMN05414478	CFSAN046631	Escherichia coli
GCA_012665785.1	AASZRN000000000		SAMN05414488	CFSAN046643	Escherichia coli
GCA_012665745.1	AASZRP000000000		SAMN05414489	CFSAN046644	Escherichia coli
GCA_012665765.1	AASZRM000000000		SAMN05414477	CFSAN046630	Escherichia coli
GCA_012665725.1	AASZRL000000000		SAMN05414487	CFSAN046642	Escherichia coli
GCA_012665685.1	AASZRO000000000		SAMN05414496	CFSAN046651	Escherichia coli
GCA_012665465.1	AASZRA000000000		SAMN05414498	CFSAN046653	Escherichia coli
GCA_012665425.1	AASZRE000000000		SAMN05414480	CFSAN046633	Escherichia coli
GCA_012665405.1	AASZRK000000000		SAMN05414495	CFSAN046650	Escherichia coli
GCA_012665385.1	AASZRJ000000000		SAMN05414484	CFSAN046639	Escherichia coli
GCA_012665345.1	AASZRI000000000		SAMN05414491	CFSAN046646	Escherichia coli
GCA_012665365.1	AASZRC000000000		SAMN05414497	CFSAN046652	Escherichia coli
GCA_012665325.1	AASZRG000000000		SAMN05414494	CFSAN046649	Escherichia coli
GCA_012665305.1	AASZRF000000000		SAMN05414500	CFSAN046655	Escherichia coli
GCA_012665285.1	AASZRH000000000		SAMN05414483	CFSAN046637	Escherichia coli
GCA_012665265.1	AASZRD000000000		SAMN05414482	CFSAN046636	Escherichia coli
GCA_012665145.1	AASZQT000000000		SAMN05414479	CFSAN046632	Escherichia coli
GCA_012665125.1	AASZQP000000000		SAMN05414493	CFSAN046648	Escherichia coli
GCA_012665105.1	AASZQI000000000		SAMN05414486	CFSAN046641	Escherichia coli
GCA_012665085.1	AASZQQ000000000		SAMN05414499	CFSAN046654	Escherichia coli
GCA_012665065.1	AASZQM000000000		SAMN05414485	CFSAN046640	Escherichia coli
GCA_012665045.1	AASZQK000000000		SAMN05414481	CFSAN046634	Escherichia coli
GCA_012665025.1	AASZQN000000000		SAMN05414513	CFSAN046668	Escherichia coli
GCA_012664985.1	AASZQJ000000000		SAMN05414623	CFSAN051540	Escherichia coli
GCA_012665005.1	AASZQH000000000		SAMN05414622	CFSAN051539	Escherichia coli
GCA_012664965.1	AASZQF000000000		SAMN05414627	CFSAN051544	Escherichia coli
GCA_012664945.1	AASZQG000000000		SAMN05414621	CFSAN051538	Escherichia coli
GCA_012664925.1	AASZQL000000000		SAMN05414626	CFSAN051543	Escherichia coli
GCA_012664905.1	AASZQE000000000		SAMN05414628	CFSAN051545	Escherichia coli
GCA_012664885.1	AASZQO000000000		SAMN05414624	CFSAN051541	Escherichia coli
GCA_012664845.1	AASZQC000000000		SAMN05414629	CFSAN051546	Escherichia coli
GCA_012664825.1	AASZPY000000000		SAMN05414514	CFSAN046669	Escherichia coli
GCA_012664865.1	AASZPX000000000		SAMN05414630	CFSAN051547	Escherichia coli
GCA_012664805.1	AASZPV000000000		SAMN05414631	CFSAN051548	Escherichia coli
GCA_012664785.1	AASZPT000000000		SAMN05414633	CFSAN051550	Escherichia coli
GCA_012664765.1	AASZQB000000000		SAMN05414636	CFSAN051553	Escherichia coli
GCA_012664745.1	AASZPZ000000000		SAMN05414632	CFSAN051549	Escherichia coli
GCA_012664715.1	AASZQD000000000		SAMN05414635	CFSAN051552	Escherichia coli
GCA_012664705.1	AASZPR000000000		SAMN05414634	CFSAN051551	Escherichia coli
GCA_012664685.1	AASZPW000000000		SAMN05414638	CFSAN051555	Escherichia coli
GCA_012664665.1	AASZPU000000000		SAMN05414639	CFSAN051556	Escherichia coli
GCA_012664645.1	AASZQA000000000		SAMN05414637	CFSAN051554	Escherichia coli
GCA_012664625.1	AASZPN000000000		SAMN05414515	CFSAN046670	Escherichia coli
GCA_012664605.1	AASZPO000000000		SAMN05414516	CFSAN046671	Escherichia coli
GCA_012664565.1	AASZPH000000000		SAMN05414517	CFSAN046672	Escherichia coli
GCA_012664585.1	AASZPK000000000		SAMN05414520	CFSAN046675	Escherichia coli
GCA_012664525.1	AASZPS000000000		SAMN05414519	CFSAN046674	Escherichia coli
GCA_012664535.1	AASZPQ000000000		SAMN05414518	CFSAN046673	Escherichia coli
GCA_012664505.1	AASZPM000000000		SAMN05414503	CFSAN046658	Escherichia coli
GCA_012664485.1	AASZPE000000000		SAMN05414524	CFSAN046679	Escherichia coli
GCA_012664465.1	AASZPL000000000		SAMN05414523	CFSAN046678	Escherichia coli
GCA_012664445.1	AASZPG000000000		SAMN05414526	CFSAN046681	Escherichia coli
GCA_012664425.1	AASZPB000000000		SAMN05414528	CFSAN046683	Escherichia coli
GCA_012664405.1	AASZPJ000000000		SAMN05414521	CFSAN046676	Escherichia coli
GCA_012664385.1	AASZPP000000000		SAMN05414522	CFSAN046677	Escherichia coli
GCA_012664345.1	AASZPC000000000		SAMN05414525	CFSAN046680	Escherichia coli
GCA_012664365.1	AASZPI000000000		SAMN05414527	CFSAN046682	Escherichia coli
GCA_012664325.1	AASZOZ000000000		SAMN05414529	CFSAN046684	Escherichia coli
GCA_012664285.1	AASZPA000000000		SAMN05414538	CFSAN046693	Escherichia coli
GCA_012664305.1	AASZPD000000000		SAMN05414532	CFSAN046687	Escherichia coli
GCA_012664245.1	AASZOX000000000		SAMN05414531	CFSAN046686	Escherichia coli
GCA_012664265.1	AASZOW000000000		SAMN05414530	CFSAN046685	Escherichia coli
GCA_012664225.1	AASZPF000000000		SAMN05414504	CFSAN046659	Escherichia coli
GCA_013045965.1	AATPGQ000000000		SAMN10359126	CFSAN053341	Escherichia coli
GCA_013045925.1	AATPGM000000000		SAMN10359125	CFSAN053340	Escherichia coli
GCA_013045805.1	AATPGL000000000		SAMN10359118	CFSAN053333	Escherichia coli
GCA_013040945.1	AATPCV000000000		SAMN05414607	CFSAN051523	Escherichia coli
GCA_013040905.1	AATPCU000000000		SAMN10505406	CFSAN051534	Escherichia coli
GCA_013040825.1	AATPCT000000000		SAMN05414616	CFSAN051532	Escherichia coli
GCA_011975015.1	AARHQK000000000		SAMN10359129	CFSAN053344	Escherichia coli
GCA_012067755.1	AARNYP000000000		SAMN10359115	CFSAN051773	Escherichia coli
GCA_012067695.1	AARNYN000000000		SAMN10359114	CFSAN051557	Escherichia coli
GCA_012068475.1	AARNYW000000000		SAMN10359132	CFSAN053347	Escherichia coli
GCA_012068455.1	AARNYV000000000		SAMN10359122	CFSAN053337	Escherichia coli
GCA_012068295.1	AARNYQ000000000		SAMN10359117	CFSAN053330	Escherichia coli
GCA_012068335.1	AARNZA000000000		SAMN10359130	CFSAN053345	Escherichia coli
GCA_012068255.1	AARNYU000000000		SAMN10359123	CFSAN053338	Escherichia coli
GCA_012068215.1	AARNYY000000000		SAMN10359128	CFSAN053343	Escherichia coli
GCA_012068175.1	AARNYT000000000		SAMN10359119	CFSAN053334	Escherichia coli
GCA_012068195.1	AARNYX000000000		SAMN10359127	CFSAN053342	Escherichia coli
GCA_012068115.1	AARNYS000000000		SAMN10359120	CFSAN053335	Escherichia coli
GCA_012068055.1	AARNYR000000000		SAMN10359116	CFSAN053329	Escherichia coli
GCA_012049905.1	AARMWQ000000000		SAMN05414609	CFSAN051525	Escherichia coli
GCA_012049725.1	AARMWP000000000		SAMN05414613	CFSAN051529	Escherichia coli
GCA_012049665.1	AARMWO000000000		SAMN05414612	CFSAN051528	Escherichia coli
GCA_012050085.1	AARMWH000000000		SAMN05414605	CFSAN051521	Escherichia coli
GCA_012050045.1	AARMWI000000000		SAMN05414615	CFSAN051531	Escherichia coli
GCA_012049785.1	AARMWM000000000		SAMN05414611	CFSAN051527	Escherichia coli
GCA_012049745.1	AARMWL000000000		SAMN05414608	CFSAN051524	Escherichia coli
GCA_012049985.1	AARMWN000000000		SAMN05414610	CFSAN051526	Escherichia coli
GCA_012049835.1	AARMWK000000000		SAMN05414606	CFSAN051522	Escherichia coli
GCA_012050125.1	AARMWJ000000000		SAMN05414617	CFSAN051533	Escherichia coli
GCA_012050105.1	AARMWG000000000		SAMN05414614	CFSAN051530	Escherichia coli

SRA Data Details

Parameter	Value
Data volume, Gbases	86
Data volume, Mbytes	53509

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Escherichia coli

GenomeTrakr Project: FDA-CFSAN MDP Escherichia coli survey from foods

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