ID 706923 - BioProject

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Accession: PRJNA706923 ID: 706923

LOEWE Centre for Translational Biodiversity Genomics (LOEWE-TBG)

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This project is a component of the Earth BioGenome Project (EBP)

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36 additional projects are components of the Earth BioGenome Project (EBP).

The LOEWE Centre for Translational Biodiversity Genomics (LOEWE TBG) aims to combine fundamental research on the genomes of a broad diversity of organisms with the development of applicable services and products. Accordingly, the central focus of LOEWE-TBG is to make genomic diversity accessible and usable as the baseline level of biodiversity for basic and applied research.

Accession	PRJNA706923
Type	Umbrella project
Submission	Registration date: 5-Mar-2021 LOEWE Centre for Translational Biodiversity Genomics (LOEWE-TBG)
Relevance	Evolution

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	59644
WGS master	270
TSA master	3
Genomic DNA	7
Transcript	52564
SRA Experiments	677
Protein Sequences	146051
Publications
PubMed	7
PMC	6
Other datasets
BioSample	554
Assembly	270

SRA Data Details

Parameter	Value
Data volume, Gbases	11,224
Data volume, Tbytes	4.29

This project encompasses the following 32 sub-projects:

Project Type

Number of Projects

Genome sequencing

Highest level of assembly :

Chromosomes
Scaffolds
Contigs
SRA or Trace
No data links
Total

4
12
2
6
1
25

BioProject accession	Assembly level	Name	Title
PRJNA668166	Scaffolds	Agrypnia vestita and Hesperophylax magnus	Agrypnia vestita and Hesperophylax magnus Genome sequencing and assembly (Brigham Young University)
PRJNA744478	SRA or Trace	Anchored Hybrid Enrichment of Himalopsyche martynovi complex	Anchored Hybrid Enrichment of Himalopsyche martynovi complex (Senckenberg Research Institute...)
PRJNA592275	Chromosomes	Betta splendens	Genome sequencing of the siamese fighting fish Betta splendens (LOEWE Centre for Translational...)
PRJEB39696	Scaffolds	Biodiversity genomics of small metazoa (Collembola)	Biodiversity genomics of small metazoa: high quality de novo genomes from single specimens of field-collected and ethanol-preserved springtails (LOEWE-TBG)
PRJNA634838	Scaffolds	Callionymus lyra	Callionymus lyra Genome sequencing and assembly (Senckenberg Nature Research...)

List all 25 'Genome sequencing' projects...

BioProject accession	Assembly level	Name	Title
PRJNA668166	Scaffolds	Agrypnia vestita and Hesperophylax magnus	Agrypnia vestita and Hesperophylax magnus Genome sequencing and assembly (Brigham Young University)
PRJNA744478	SRA or Trace	Anchored Hybrid Enrichment of Himalopsyche martynovi complex	Anchored Hybrid Enrichment of Himalopsyche martynovi complex (Senckenberg Research Institute...)
PRJNA592275	Chromosomes	Betta splendens	Genome sequencing of the siamese fighting fish Betta splendens (LOEWE Centre for Translational...)
PRJEB39696	Scaffolds	Biodiversity genomics of small metazoa (Collembola)	Biodiversity genomics of small metazoa: high quality de novo genomes from single specimens of field-collected and ethanol-preserved springtails (LOEWE-TBG)
PRJNA634838	Scaffolds	Callionymus lyra	Callionymus lyra Genome sequencing and assembly (Senckenberg Nature Research...)
PRJEB41346	Scaffolds	Candidula unifasciata genome	Draft genome assembly for the land snail Candiudla unifasciata (Gastropoda: Geomitride) (Senckenber Biodiversity and...)
PRJEB27753	Scaffolds	Chironomus riparius (Laufer) draft genome v3	Chironomus riparius (Laufer) draft genome v3 (Institute of Molecular Genetic,...)
PRJNA607736	SRA or Trace	De novo microsatellite loci identification	De novo microsatellite loci identification (LOEWE Centre for Translational...)
PRJNA450822	Chromosomes	Fagus sylvatica	Fagus sylvatica Genome sequencing and assembly (Kazimierz Wielki University)
PRJNA667001	Scaffolds	Genome sequencing of Myanophis thanlyinensis	Genome sequencing of Myanophis thanlyinensis (LOEWE Centre for Translational...)
PRJNA607882	SRA or Trace	Gentiana	Gentiana Raw sequence reads (LOEWE Centre for Translational...)
PRJNA635165	Scaffolds	Giraffa	Genome sequencing and assembly of giraffe (Giraffa spp.) (Senckenberg Nature Research...)
PRJNA925497	Chromosomes	Inia geoffrensis	Inia geoffrensis (Amazon river dolphin) genome, mIniGeo1, haplotype 1 (Cetaceans Genome Project)
PRJNA925498	Chromosomes	Inia geoffrensis	Inia geoffrensis (Amazon river dolphin) genome, mIniGeo1, haplotype 2 (Cetaceans Genome Project)
PRJNA745544	No data links	Limnonectes	Holotypes of two new species Limnonectes bagoensis and Limnonectes bagoyoma Nuclear and Mitochondrial Genomes (LOEWE- Centre for Translational...)
PRJEB35998	Scaffolds	MT_Merr	The genome of Microthlaspi erraticum (Brassicaceae) using Pacbio and Illumina Hiseq data. (Senckenberg Biodiversity...)
PRJNA780396	Contigs	Notopais	Genome sequencing of Southern Ocean benthic isopods (LOEWE Centre for Translational...)
PRJEB41734	Scaffolds	Nyctereutes procyonoides genome	Draft genome assembly of raccoon dog (Nyctereutes procyonoides) (Senckenber Biodiversity and...)
PRJNA955236	Scaffolds	Nyctereutes procyonoides genome	Refseq (NCBI)
PRJNA687006	Contigs	Phrynoglossus myanhessei	Genome sequencing of Phrynoglossus myanhessei (LOEWE Centre for Translational...)
PRJNA555750	SRA or Trace	Pimpla turionellae	Venom-genomics of the endoparasitoid wasp Pimpla turionellae. (Institute for Insectbiotechnology,...)
PRJNA758215	Scaffolds	Soil invertebrates from the LOEWE TBG and Senckenberg project 'Metagenomic monitoring of soil communities' (MetaInvert)	Soil invertebrates from the LOEWE TBG and Senckenberg project 'Metagenomic monitoring of soil communities' (MetaInvert) (LOEWE Centre for Translational...)
PRJNA445603	SRA or Trace	Sphenodon punctatus	Sphenodon punctatus (Tuatara) genome sequencing and assembly (University of Otago)
PRJNA558902	Scaffolds	Trichoptera	Comparative genomics of Trichoptera Genome sequencing and assembly (LOEWE Centre for Translational...)
PRJNA634567	SRA or Trace	Venomics of the wasp spider Argiope bruennichi	Venomics of the wasp spider Argiope bruennichi (Branch for Bioresources of...)

Less...

Other

BioProject accession	Name	Title
PRJEB27747	Chironomus riparius mitochondrial genome	Chironomus riparius mitochondrial genome (Institute of Molecular Genetic,...)
PRJEB35704	Divergence landscape in Chironomus	Analysis of genomic divergence landscape in recurrently hybridising Chironomus sister taxa suggests stable steady-state between mutual gene-flow and isolation (Senckenber Biodiversity and...)
PRJEB41889	Drought resistance in Fagus sylvatica	Genomic basis of drought resistance in Fagus sylvatica by PoolGWAS (Senckenber Biodiversity and...)
PRJEB24056	The European Beech	The genome of the European Beech (Fagus sylvatica) shows no traces of horizontal gene transfer from fungi and provides a resource for future studies for a climate-change-adapted forestry in Europe (Integrative Pilzforschung)
PRJEB42422	Yarrowia-like yeast symbionts associated with Nicrophorus beetles	Genomic analysis of novel Yarrowia-like yeast symbionts associated with the carrion-feeding burying beetle Nicrophorus vespilloides (Max-Planck-Institute for...)

List all 6 'Other' projects...

transcriptome

BioProject accession	Organism	Title
PRJNA636261	Amphiporus lactifloreus	Toxin evolution in nemerteans or ribbon worms (Institute for Insectbiotechnology,...)

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