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Genome Information for Gallus gallus
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The red junglefowl (Gallus gallus) is a tropical bird native to Southeast Asia and parts of South Asia, and a domesticated subspecies (the chicken) is one of the most widespread domestic animals. This genome was supported by Antton Alberdi Estibaritz, Tom Gilbert, Sofia Marcos, and Antone Estonba. Sequencing and assembly were conducted at the Vertebrate Genomes Lab (VGL) at The Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis, as part of the Vertebrate Genomes Project (VGP).
| Accession | PRJNA915403 |
| Type | Umbrella project |
| Organism | Gallus gallus[Taxonomy ID: 9031] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus; Gallus gallus |
| Submission | Registration date: 23-Dec-2022
Vertebrate Genomes Project |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 43 |
| WGS master | 2 |
| SRA Experiments | 10 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds SRA or Trace Total |
1
1
1
3
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA838370 | Chromosomes | Gallus gallus | Gallus gallus (red junglefowl) genome, bGalGal5, primary haplotype (Vertebrate Genomes Project) | | PRJNA838371 | Scaffolds | Gallus gallus | Gallus gallus (red junglefowl) genome, bGalGal5, alternate haplotype (Vertebrate Genomes Project) | | PRJNA1007624 | SRA or Trace | Gallus gallus (red junglefowl) genome, bGalGal5, sequence data. | Gallus gallus (red junglefowl) genome, bGalGal5, sequence data. (G10K) |
|