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Accession: PRJNA183850 ID: 183850

Salmonella enterica

GenomeTrakr Project: NY State Dept. of Health, Wadsworth Center

See Genome Information for Salmonella enterica
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
AccessionPRJNA183850
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismSalmonella enterica[Taxonomy ID: 28901]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica
SubmissionRegistration date: 25-Jan-2016
New York State Dept. of Health - Wadsworth Center
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)10480
WGS master2006
Genomic DNA4
SRA Experiments2180
Protein Sequences436325
Other datasets
BioSample2214
Assembly2008
Assembly details:
Assembly levelNumber of Assemblies
2
4
2001
2007
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_031501505.1ContigABMJHN000000000
SAMN34415912
H2-037
GCA_031501585.1ContigABMJHM000000000
SAMN34415911
H2-035
GCA_031500825.1ContigABMJGW000000000
SAMN34415916
H2-056
GCA_031500805.1ContigABMJGV000000000
SAMN34415906
H2-015
GCA_031501435.1ContigABMJHK000000000
SAMN34415909
H2-029
GCA_031501395.1ContigABMJHL000000000
SAMN34415910
H2-032
GCA_031501355.1ContigABMJHH000000000
SAMN34415930
H2-095
GCA_031501325.1ContigABMJHI000000000
SAMN34415929
H2-093
GCA_031501305.1ContigABMJHJ000000000
SAMN34415931
H2-098
GCA_031501265.1ContigABMJHD000000000
SAMN34415908
H2-025
GCA_031501225.1ContigABMJHG000000000
SAMN34415928
H2-083
GCA_031501185.1ContigABMJHE000000000
SAMN34415925
H2-074
GCA_031501165.1ContigABMJHC000000000
SAMN34415924
H2-073
GCA_031501145.1ContigABMJHF000000000
SAMN34415927
H2-078
GCA_031501055.1ContigABMJHB000000000
SAMN34415923
H2-066
GCA_031501015.1ContigABMJGY000000000
SAMN34415920
H2-060
GCA_031500965.1ContigABMJHA000000000
SAMN34415922
H2-064
GCA_031500985.1ContigABMJGZ000000000
SAMN34415921
H2-063
GCA_031500945.1ContigABMJGX000000000
SAMN34415917
H2-057
GCA_030759815.1ContigABLQFS000000000
SAMN34351242
PNUSA343969
GCA_030759795.1ContigABLQFR000000000
SAMN34351241
PNUSA343968
GCA_032277985.1ContigABNFSD000000000
SAMN34380667
PNUSAS344556
GCA_032268395.1ContigABNFCI000000000
SAMN34415914
H2-041
GCA_032268365.1ContigABNFCH000000000
SAMN34415913
H2-040
GCA_032268385.1ContigABNFCK000000000
SAMN34415915
H2-051
GCA_032268345.1ContigABNFCG000000000
SAMN34415926
H2-077
GCA_032268325.1ContigABNFCF000000000
SAMN34415919
H2-059
GCA_032268305.1ContigABNFCE000000000
SAMN34415918
H2-058
GCA_032268285.1ContigABNFCD000000000
SAMN34415907
H2-022
GCA_032946735.1ContigABOFTW000000000
SAMN35685578
H2-116
GCA_032946715.1ContigABOFTV000000000
SAMN35685577
H2-115
GCA_032946695.1ContigABOFTU000000000
SAMN35685576
H2-114
GCA_032946655.1ContigABOFTS000000000
SAMN35685574
H2-109
GCA_032946635.1ContigABOFTR000000000
SAMN35685573
H2-108
GCA_032946675.1ContigABOFTT000000000
SAMN35685575
H2-110
GCA_032946615.1ContigABOFTQ000000000
SAMN35685572
H2-106
GCA_032946595.1ContigABOFTP000000000
SAMN35685571
H2-103
GCA_032946575.1ContigABOFTM000000000
SAMN35685570
H2-102
GCA_032946555.1ContigABOFTN000000000
SAMN35685569
H2-100
GCA_016591095.1ContigAAYRCN000000000
SAMN03795472
CFSAN035083
GCA_016335535.1ContigAAYGLW000000000
SAMN04535179
NY62259097
GCA_016335135.1ContigAAYGLL000000000
SAMN04958697
NY64247713
GCA_016331565.1ContigAAYGEI000000000
SAMN02595814
NY-swgs1100
GCA_016330925.1ContigAAYGDJ000000000
SAMN02595812
NY-swgs1098
GCA_016326545.1ContigAAYFUL000000000
SAMN04535181
NY62259358
GCA_016328185.1ContigAAYFYC000000000
SAMN03276080
NY-N14325
GCA_016328785.1ContigAAYFZD000000000
SAMN02595827
NY-swgs1113
GCA_016328745.1ContigAAYFZB000000000
SAMN02595881
NY-swgs1167
GCA_016328725.1ContigAAYFYY000000000
SAMN02595819
NY-swgs1105
GCA_016328665.1ContigAAYFZA000000000
SAMN02595864
NY-swgs1150
GCA_016328625.1ContigAAYFYX000000000
SAMN02222899
NY_02031374
GCA_016328605.1ContigAAYFYZ000000000
SAMN02595824
NY-swgs1110
GCA_016251335.1ContigAAYBVK000000000
SAMN12662374
PNUSAS092983
GCA_016377165.1ContigAAYIZW000000000
SAMN02595876
NY-swgs1162
GCA_016376085.1ContigAAYIXQ000000000
SAMN08387153
ULBRA-SA214
GCA_016375225.1ContigAAYIWO000000000
SAMN04958696
NY64247673
GCA_020866185.1ContigABDVJJ000000000
SAMN23007936
IDR2100096248-01
GCA_020866165.1ContigABDVJK000000000
SAMN23007938
IDR2100096250-01
GCA_020866145.1ContigABDVJI000000000
SAMN23007937
IDR2100096249-01
GCA_020866285.1ContigABDVJO000000000
SAMN23007932
IDR2100096244-01
GCA_020866265.1ContigABDVJN000000000
SAMN23007941
IDR2100096255-01
GCA_020866245.1ContigABDVJL000000000
SAMN23007940
IDR2100096253-01
GCA_020866225.1ContigABDVJM000000000
SAMN23007939
IDR2100096251-01
GCA_020866345.1ContigABDVJQ000000000
SAMN23007935
IDR2100096247-01
GCA_020866325.1ContigABDVJR000000000
SAMN23007934
IDR2100096246-01
GCA_020866305.1ContigABDVJP000000000
SAMN23007933
IDR2100096245-01
GCA_006952825.2Complete genomeSAMN02989073
CFSAN023357
GCA_020980025.1ContigABEAKI000000000
SAMN23425967
IDR2100097525-01
GCA_020979865.1ContigABEAKB000000000
SAMN23425964
IDR2100097383-01
GCA_020984945.1ContigABEAKP000000000
SAMN23425966
IDR2100097524-01
GCA_020985045.1ContigABEAKQ000000000
SAMN23425968
IDR2100097527-01
GCA_020977065.1ContigABEAEU000000000
SAMN23425972
IDR2100097544-01
GCA_020977405.1ContigABEAFN000000000
SAMN23425975
IDR2100097547-01
GCA_020977365.1ContigABEAFG000000000
SAMN23425960
IDR2100097379-01
GCA_020978805.1ContigABEAHY000000000
SAMN23425965
IDR2100097523-01
GCA_020978245.1ContigABEAGY000000000
SAMN23425973
IDR2100097545-01
GCA_020978265.1ContigABEAGZ000000000
SAMN23425963
IDR2100097382-01
GCA_020978205.1ContigABEAGW000000000
SAMN23425971
IDR2100097543-01
GCA_020978185.1ContigABEAHA000000000
SAMN23425974
IDR2100097546-01
GCA_020978165.1ContigABEAGV000000000
SAMN23425959
IDR2100097377-01
GCA_020978145.1ContigABEAGX000000000
SAMN23425969
IDR2100097528-01
GCA_020978705.1ContigABEAHT000000000
SAMN23425970
IDR2100097529-01
GCA_020978685.1ContigABEAIA000000000
SAMN23425961
IDR2100097380-01
GCA_020978325.1ContigABEAHB000000000
SAMN23425962
IDR2100097381-01
GCA_019730195.1ContigABCBSZ000000000
SAMN20868066
IDR2100079853-01
GCA_019729855.1ContigABCBSQ000000000
SAMN20868062
IDR2100079844-01
GCA_019729575.1ContigABCBRU000000000
SAMN20868065
IDR2100079851-01
GCA_019729915.1ContigABCBST000000000
SAMN20868063
IDR2100079847-01
GCA_019730075.1ContigABCBSR000000000
SAMN20868060
IDR2100079841-01
GCA_019730055.1ContigABCBSS000000000
SAMN20868057
IDR2100079835-01
GCA_021566075.1ContigABETGA000000000
SAMN25225895
IDR2100108223-01
GCA_021566295.1ContigABETGM000000000
SAMN25225884
IDR2100108124-01
GCA_021566355.1ContigABETHC000000000
SAMN25225898
IDR2100108226-01
GCA_021566155.1ContigABETFZ000000000
SAMN25225894
IDR2100108222-01
GCA_021566575.1ContigABETGQ000000000
SAMN25225890
IDR2100108153-01
GCA_021566555.1ContigABETGN000000000
SAMN25225887
IDR2100108144-01
GCA_021566455.1ContigABETGO000000000
SAMN25225896
IDR2100108224-01
GCA_021566595.1ContigABETGP000000000
SAMN25225889
IDR2100108150-01
GCA_021566375.1ContigABETHK000000000
SAMN25225885
IDR2100108133-01
GCA_021566435.1ContigABETHD000000000
SAMN25225891
IDR2100108219-01
GCA_021568035.1ContigABETJO000000000
SAMN25225892
IDR2100108220-01
GCA_021567915.1ContigABETJK000000000
SAMN25225893
IDR2100108221-01
GCA_021567895.1ContigABETJI000000000
SAMN25225888
IDR2100108147-01
GCA_021567875.1ContigABETJJ000000000
SAMN25225886
IDR2100108139-01
GCA_021581295.1ContigABETOO000000000
SAMN25225897
IDR2100108225-01
GCA_019322275.1ContigABBLFZ000000000
SAMN20327863
IDR2100073335-01
GCA_019322255.1ContigABBLFU000000000
SAMN20327856
IDR2100073324-01
GCA_019322235.1ContigABBLFX000000000
SAMN20327861
IDR2100073333-01
GCA_019322215.1ContigABBLFW000000000
SAMN20327857
IDR2100073328-01
GCA_019322195.1ContigABBLGB000000000
SAMN20327864
IDR2100073336-01
GCA_019322175.1ContigABBLGC000000000
SAMN20327854
IDR2100069011-01
GCA_019322965.1ContigABBLGM000000000
SAMN20327859
IDR2100073331-01
GCA_019322925.1ContigABBLGJ000000000
SAMN20327860
IDR2100073332-01
GCA_019322775.1ContigABBLGE000000000
SAMN20327855
IDR2100073320-01
GCA_019322695.1ContigABBLGH000000000
SAMN20327862
IDR2100073334-01
GCA_019322635.1ContigABBLGF000000000
SAMN20327858
IDR2100073330-01
GCA_019270585.1ContigABBJBM000000000
SAMN20247393
IDR2100071954-01
GCA_019270515.1ContigABBJBL000000000
SAMN20247402
IDR2100071974-01
GCA_019270485.1ContigABBJBK000000000
SAMN20247392
IDR2100071953-01
GCA_019270415.1ContigABBJBJ000000000
SAMN20247391
IDR2100071950-01
GCA_019270395.1ContigABBJBI000000000
SAMN20247401
IDR2100071973-01
GCA_019270815.1ContigABBJCC000000000
SAMN20247397
IDR2100071965-01
GCA_019270975.1ContigABBJCA000000000
SAMN20247398
IDR2100071968-01
GCA_019270915.1ContigABBJCB000000000
SAMN20247399
IDR2100071971-01
GCA_019270895.1ContigABBJCD000000000
SAMN20247400
IDR2100071972-01
GCA_019270845.1ContigABBJBY000000000
SAMN20247396
IDR2100071963-01
GCA_019270835.1ContigABBJBX000000000
SAMN20247394
IDR2100071959-01
GCA_019270775.1ContigABBJBZ000000000
SAMN20247395
IDR2100071961-01
GCA_019197405.1ContigABBGGW000000000
SAMN20090294
E1300-87
GCA_019197395.1ContigABBGGR000000000
SAMN20090295
E1301-87
GCA_019197375.1ContigABBGGQ000000000
SAMN20090291
E1297-87
GCA_019197355.1ContigABBGGP000000000
SAMN20090290
E1296-87
GCA_019197335.1ContigABBGGO000000000
SAMN20090289
E1295-87
GCA_019197255.1ContigABBGGN000000000
SAMN20090288
E1293-87
GCA_019197495.1ContigABBGGU000000000
SAMN20090292
E1298-87
GCA_019197455.1ContigABBGGY000000000
SAMN20090293
E1299-87
GCA_019728675.1ContigABCBPX000000000
SAMN20868061
IDR2100079842-01
GCA_019729115.1ContigABCBQV000000000
SAMN20868064
IDR2100079848-01
GCA_019729055.1ContigABCBQO000000000
SAMN20868068
IDR2100079856-01
GCA_019729035.1ContigABCBQK000000000
SAMN20868059
IDR2100079839-01
GCA_019728995.1ContigABCBQJ000000000
SAMN20868067
IDR2100079854-01
GCA_019728975.1ContigABCBQM000000000
SAMN20868058
IDR2100079838-01
GCA_006079495.1ContigAAENGL000000000
SAMN10392962
ULBRA-SF313
GCA_006079475.1ContigAAENGG000000000
SAMN10393041
ULBRA-SF294
GCA_006085115.1ContigAAENUN000000000
SAMN02989106
CFSAN023447
GCA_006077035.1ContigAAENFL000000000
SAMN08386972
RS-SF01341/12
GCA_006077015.1ContigAAENFM000000000
SAMN08387099
RS-SF05140/14
GCA_006076995.1ContigAAENFG000000000
SAMN08387051
UFRGS-SA045
GCA_006076975.1ContigAAENFW000000000
SAMN08386757
UFRGS-SA038
GCA_006076955.1ContigAAENFP000000000
SAMN08386799
UFRGS-SA048
GCA_006076915.1ContigAAENFJ000000000
SAMN08386748
UFRGS-SA031
GCA_006076935.1ContigAAENFF000000000
SAMN08386751
UFRGS-SA011
GCA_006076895.1ContigAAENFC000000000
SAMN08386755
UFRGS-SA009
GCA_006076875.1ContigAAENGB000000000
SAMN10393014
ULBRA-SF312
GCA_006076855.1ContigAAENFQ000000000
SAMN08386759
UFRGS-SA037
GCA_006076835.1ContigAAENFO000000000
SAMN08386736
SSSE-65
GCA_006076795.1ContigAAENFD000000000
SAMN08386750
UFRGS-SA034
GCA_006076595.1ContigAAENFX000000000
SAMN10392965
ULBRA-SF309
GCA_006076575.1ContigAAENFY000000000
SAMN10393015
ULBRA-SF322
GCA_006076535.1ContigAAENGI000000000
SAMN10392969
ULBRA-SF310
GCA_006076465.1ContigAAENFK000000000
SAMN08387124
RS-SF01156/13
GCA_006076395.1ContigAAENFN000000000
SAMN08386964
RS-SF15595/10
GCA_006076375.1ContigAAENGA000000000
SAMN08386769
RS-SF03089/11
GCA_006076355.1ContigAAENFR000000000
SAMN10393046
ULBRA-SF305
GCA_006075615.1ContigAAENCT000000000
SAMN08387137
ULBRA-SA053
GCA_006075475.1ContigAAENCX000000000
SAMN08387076
ULBRA-SA062
GCA_006075115.1ContigAAENCD000000000
SAMN08387150
RS-SF00434/10
GCA_006075055.1ContigAAENCF000000000
SAMN08387141
ULBRA-SA052
GCA_006074615.1ContigAAENAR000000000
SAMN08386771
RS-SF00998/12
GCA_006073695.1ContigAAENAC000000000
SAMN08387146
RS-SF03456/10
GCA_006073655.1ContigAAEMZY000000000
SAMN08387194
ULBRA-SA078
GCA_006073495.1ContigAAEMZW000000000
SAMN08387082
ULBRA-SA255
GCA_006073395.1ContigAAEMZU000000000
SAMN08386776
UFRGS-SA042
GCA_005933935.1ContigAAECTB000000000
SAMN02298222
ATCC BAA-664
GCA_006003085.1ContigAAEHVA000000000
SAMN10392964
ULBRA-SF308
GCA_006002565.1ContigAAEHTY000000000
SAMN10392970
ULBRA-SF314
GCA_006002485.1ContigAAEHTT000000000
SAMN10392963
ULBRA-SF311
GCA_006002425.1ContigAAEHTI000000000
SAMN10393069
ULBRA-SF303
GCA_006002405.1ContigAAEHTO000000000
SAMN10393068
ULBRA-SF304
GCA_006002385.1ContigAAEHTJ000000000
SAMN10393035
ULBRA-SF300
GCA_006002325.1ContigAAEHTD000000000
SAMN10393034
ULBRA-SF323
GCA_006002305.1ContigAAEHTF000000000
SAMN08387093
RS-SF05209/14
GCA_006002285.1ContigAAEHSW000000000
SAMN08387171
RS-SF10794/13
GCA_006002245.1ContigAAEHTC000000000
SAMN08386767
RS-SF13568/11
GCA_006002265.1ContigAAEHTA000000000
SAMN08386777
RS-SF01352/12
GCA_006002185.1ContigAAEHSY000000000
SAMN08386768
RS-SF15875/10
GCA_006002165.1ContigAAEHSV000000000
SAMN08387050
UFRGS-SA046
GCA_006002145.1ContigAAEHSZ000000000
SAMN08386844
RS-SF09687/13
GCA_006002125.1ContigAAEHTK000000000
SAMN10393071
ULBRA-SF296
GCA_006002085.1ContigAAEHTE000000000
SAMN10393031
ULBRA-SF293
GCA_006002065.1ContigAAEHTB000000000
SAMN10393076
ULBRA-SF295
GCA_006002045.1ContigAAEHSX000000000
SAMN08386761
UFRGS-SA040
GCA_006002005.1ContigAAEHSU000000000
SAMN08386773
RS-SF00991/12
GCA_006001965.1ContigAAEHTL000000000
SAMN10393072
ULBRA-SF306
GCA_006001945.1ContigAAEHTM000000000
SAMN10392967
ULBRA-SF307
GCA_006001845.1ContigAAEHST000000000
SAMN08386746
UFRGS-SA030
GCA_006001825.1ContigAAEHSS000000000
SAMN08386775
UFRGS-SA041
GCA_006001805.1ContigAAEHSR000000000
SAMN08386753
UFRGS-SA010
GCA_006001785.1ContigAAEHSQ000000000
SAMN08386763
UFRGS-SA039
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SAMN08386778
UFRGS-SA043
GCA_006001745.1ContigAAEHSP000000000
SAMN08386839
UFRGS-SA007
GCA_005999385.1ContigAAEHNQ000000000
SAMN08387118
ULBRA-SA009
GCA_005999325.1ContigAAEHNL000000000
SAMN08387173
ULBRA-SA068
GCA_005998245.1ContigAAEHLF000000000
SAMN09630290
NY89812649
GCA_005998125.1ContigAAEHNJ000000000
SAMN08387059
ULBRA-SA215
GCA_005998105.1ContigAAEHNP000000000
SAMN08387183
ULBRA-SA210
GCA_005998045.1ContigAAEHNO000000000
SAMN08387181
ULBRA-SA209
GCA_005997965.1ContigAAEHNK000000000
SAMN08386965
RS-SF00022/10
GCA_005997705.1ContigAAEHNI000000000
SAMN08387077
ULBRA-SA066
GCA_005997665.1ContigAAEHNM000000000
SAMN08386998
ULBRA-SA253
GCA_005997645.1ContigAAEHNN000000000
SAMN08387081
ULBRA-SA256
GCA_005997605.1ContigAAEHKH000000000
SAMN08387180
RS-SF09692/13
GCA_005997045.1ContigAAEHKD000000000
SAMN08387149
ULBRA-SA065
GCA_005996745.1ContigAAEHKL000000000
SAMN08386741
UFRGS-SA032
GCA_005996665.1ContigAAEHKK000000000
SAMN08387089
RS-SF01623/15
GCA_005899285.1ContigAAEAJH000000000
SAMN03838173
POR1-0138
GCA_005899245.1ContigAAEAJD000000000
SAMN03838167
POR1-0122
GCA_005898505.1ContigAAEAHP000000000
SAMN02983190
POR1-0047
GCA_005902545.1ContigAAEAPK000000000
SAMN08387013
SSSE-26
GCA_005902505.1ContigAAEAPI000000000
SAMN08386811
UFRGS-SA006
GCA_005902485.1ContigAAEAPN000000000
SAMN08386783
UFRGS-SA003
GCA_005902445.1ContigAAEAPG000000000
SAMN08386781
UFRGS-SA002
GCA_005902455.1ContigAAEAPF000000000
SAMN08386840
UFRGS-SA004
GCA_005902025.1ContigAAEANW000000000
SAMN08387071
ULBRA-SA258
GCA_005902005.1ContigAAEAOD000000000
SAMN08387066
ULBRA-SA269
GCA_005900465.1ContigAAEALI000000000
SAMN08387085
ULBRA-SA271
GCA_005900445.1ContigAAEALU000000000
SAMN08386810
UFRGS-SA005
GCA_006240335.1ContigAAEXWF000000000
SAMN02777836
NY-N155
GCA_006240315.1ContigAAEXWE000000000
SAMN02777837
NY-N156
GCA_006158665.1ContigAAESZN000000000
SAMN01902271
NY_BAC0600004286
GCA_006158405.1ContigAAESXZ000000000
SAMN02777834
NY-N153
GCA_006158205.1ContigAAESYD000000000
SAMN02777835
NY-N154
GCA_006145955.1ContigAAESBI000000000
SAMN10393042
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SRA Data Details
ParameterValue
Data volume, Gbases940
Data volume, Tbytes0.52

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