ID 981054 - BioProject

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Accession: PRJEB62839 ID: 981054

EMG produced TPA metagenomics assembly of PRJEB52748 data set (Gut microbiome function and composition in infants from rural Kenya and association with human milk oligosaccharides).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB52748, and was assembled with metaspades v3. More...

Accession	PRJEB62839
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "MGnify: the microbiome analysis resource in 2020.", Nucleic Acids Res, 2020 Jan 8;48(D1):D570-D578
Submission	Registration date: 7-Jun-2023 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	22769
WGS master	213
Publications
PubMed	1
PMC	1
Other datasets
BioSample	213
Assembly	213

Assembly details:

Download

Assembly level

Number of Assemblies

Contig

Total

213
213

Assembly	WGS	BioSample	Taxonomy
GCA_958405915.1	CATYFG000000000	SAMEA114061423	Acidaminococcus intestini
GCA_958347805.1	CATVWS000000000	SAMEA114061472	Acidaminococcus massiliensis
GCA_958349065.1	CATWBP000000000	SAMEA114061494	Actinomyces urogenitalis
GCA_958439085.1	CAUBUD000000000	SAMEA114061353	Agathobacter rectalis
GCA_958348755.1	CATWAK000000000	SAMEA114061390	Akkermansia muciniphila
GCA_958412185.1	CATYSG000000000	SAMEA114061358	Akkermansia muciniphila
GCA_958349145.1	CATWBY000000000	SAMEA114061505	Alistipes finegoldii
GCA_958404835.1	CATYCM000000000	SAMEA114061471	Alistipes onderdonkii
GCA_958439185.1	CAUBUL000000000	SAMEA114061352	Anaerostipes hadrus
GCA_958437985.1	CAUBQA000000000	SAMEA114061389	Bacteroides caccae
GCA_958412235.1	CATYSK000000000	SAMEA114061362	Bacteroides fragilis
GCA_958348995.1	CATWBI000000000	SAMEA114061531	Bacteroides fragilis
GCA_958437945.1	CAUBPV000000000	SAMEA114061436	Bacteroides ovatus
GCA_958415725.1	CATYZO000000000	SAMEA114061400	Bacteroides stercoris
GCA_958437875.1	CAUBPQ000000000	SAMEA114061361	Bacteroides thetaiotaomicron
GCA_958349695.1	CATWEG000000000	SAMEA114061370	Bacteroides uniformis
GCA_958415775.1	CATYZR000000000	SAMEA114061373	Bifidobacterium animalis
GCA_958415645.1	CATYZJ000000000	SAMEA114061397	Bifidobacterium bifidum
GCA_958415195.1	CATYYM000000000	SAMEA114061543	Bifidobacterium breve
GCA_958405835.1	CATYFD000000000	SAMEA114061348	Bifidobacterium breve
GCA_958414975.1	CATYXW000000000	SAMEA114061517	Bifidobacterium catenulatum
GCA_958439055.1	CAUBUB000000000	SAMEA114061355	Bifidobacterium catenulatum
GCA_958437775.1	CAUBPE000000000	SAMEA114061399	Bifidobacterium catenulatum
GCA_958349155.1	CATWBX000000000	SAMEA114061491	Bifidobacterium dentium
GCA_958347815.1	CATVWP000000000	SAMEA114061418	Bifidobacterium longum
GCA_958412295.1	CATYSL000000000	SAMEA114061486	Bifidobacterium longum
GCA_958348965.1	CATWBE000000000	SAMEA114061508	Bifidobacterium pseudocatenulatum
GCA_958415705.1	CATYZQ000000000	SAMEA114061359	Bilophila wadsworthia
GCA_958405855.1	CATYFF000000000	SAMEA114061449	Blautia marasmi
GCA_958414985.1	CATYXY000000000	SAMEA114061511	Blautia wexlerae
GCA_958348865.1	CATWAX000000000	SAMEA114061380	Blautia wexlerae
GCA_958349105.1	CATWBS000000000	SAMEA114061484	Candidatus Campylobacter infans
GCA_958415285.1	CATYYT000000000	SAMEA114061473	Candidatus Collinsella stercoripullorum
GCA_958415585.1	CATYZH000000000	SAMEA114061546	Collinsella bouchesdurhonensis
GCA_958439145.1	CAUBUK000000000	SAMEA114061349	Coprococcus catus
GCA_958405725.1	CATYEV000000000	SAMEA114061431	Corynebacterium xerosis
GCA_958439025.1	CAUBTY000000000	SAMEA114061447	Cronobacter sakazakii
GCA_958349135.1	CATWBW000000000	SAMEA114061513	Desulfovibrio piger
GCA_958349975.1	CATWFD000000000	SAMEA114061347	Dorea formicigenerans
GCA_958415975.1	CATZAB000000000	SAMEA114061384	Dorea longicatena
GCA_958412325.1	CATYSN000000000	SAMEA114061448	Eggerthella lenta
GCA_958438095.1	CAUBQK000000000	SAMEA114061442	Enterobacter cloacae
GCA_958404745.1	CATYCD000000000	SAMEA114061398	Enterocloster bolteae
GCA_958412375.1	CATYSR000000000	SAMEA114061446	Enterocloster clostridioformis
GCA_958405845.1	CATYFE000000000	SAMEA114061445	Enterococcus asini
GCA_958415405.1	CATYYZ000000000	SAMEA114061521	Enterococcus avium
GCA_958404775.1	CATYCG000000000	SAMEA114061474	Enterococcus faecium
GCA_958415395.1	CATYYW000000000	SAMEA114061532	Enterococcus raffinosus
GCA_958412365.1	CATYSP000000000	SAMEA114061482	Escherichia coli
GCA_958415455.1	CATYZD000000000	SAMEA114061523	Eubacterium limosum
GCA_958439125.1	CAUBUE000000000	SAMEA114061351	Faecalibacterium prausnitzii
GCA_958415745.1	CATYZP000000000	SAMEA114061542	Faecalibacterium prausnitzii
GCA_958414875.1	CATYXS000000000	SAMEA114061506	Faecalibacterium prausnitzii
GCA_958438985.1	CAUBTT000000000	SAMEA114061433	Flavonifractor plautii
GCA_958412145.1	CATYSF000000000	SAMEA114061350	Fusicatenibacter saccharivorans
GCA_958415265.1	CATYYS000000000	SAMEA114061478	Fusobacterium mortiferum
GCA_958347775.1	CATVWM000000000	SAMEA114061463	Gardnerella vaginalis
GCA_958349565.1	CATWDP000000000	SAMEA114061434	Geobacillus stearothermophilus
GCA_958350025.1	CATWFG000000000	SAMEA114061454	Haemophilus parainfluenzae
GCA_958439045.1	CAUBTW000000000	SAMEA114061427	Isoptericola variabilis
GCA_958439095.1	CAUBUH000000000	SAMEA114061428	Klebsiella pneumoniae
GCA_958437965.1	CAUBPX000000000	SAMEA114061365	Kurthia gibsonii
GCA_958415165.1	CATYYK000000000	SAMEA114061537	Lacrimispora saccharolytica
GCA_958412305.1	CATYSM000000000	SAMEA114061490	Lacticaseibacillus rhamnosus
GCA_958437915.1	CAUBPT000000000	SAMEA114061460	Lactobacillus gasseri
GCA_958349645.1	CATWDY000000000	SAMEA114061437	Leminorella grimontii
GCA_958438105.1	CAUBQL000000000	SAMEA114061464	Leuconostoc lactis
GCA_958350145.1	CATWFR000000000	SAMEA114061426	Ligilactobacillus agilis
GCA_958415985.1	CATYZY000000000	SAMEA114061419	Ligilactobacillus ruminis
GCA_958347905.1	CATVXC000000000	SAMEA114061462	Ligilactobacillus salivarius
GCA_958415475.1	CATYZB000000000	SAMEA114061539	Ligilactobacillus salivarius
GCA_958437855.1	CAUBPN000000000	SAMEA114061412	Limosilactobacillus fermentum
GCA_958415335.1	CATYYV000000000	SAMEA114061493	Limosilactobacillus gastricus
GCA_958439135.1	CAUBUG000000000	SAMEA114061342	Limosilactobacillus mucosae
GCA_958348775.1	CATWAM000000000	SAMEA114061339	Limosilactobacillus oris
GCA_958412415.1	CATYSS000000000	SAMEA114061492	Limosilactobacillus vaginalis
GCA_958437995.1	CAUBPZ000000000	SAMEA114061468	Mediterraneibacter gnavus
GCA_958405665.1	CATYES000000000	SAMEA114061409	Megamonas funiformis
GCA_958349035.1	CATWBL000000000	SAMEA114061470	Megasphaera elsdenii
GCA_958416005.1	CATYZZ000000000	SAMEA114061385	Megasphaera micronuciformis
GCA_958405705.1	CATYEU000000000	SAMEA114061429	Micrococcus luteus
GCA_958347665.1	CATVWE000000000	SAMEA114061366	Mitsuokella multacida
GCA_958415055.1	CATYYD000000000	SAMEA114061518	Olsenella uli
GCA_958416015.1	CATZAC000000000	SAMEA114061381	Parabacteroides distasonis
GCA_958404825.1	CATYCL000000000	SAMEA114061391	Parabacteroides merdae
GCA_958415115.1	CATYYG000000000	SAMEA114061540	Parasutterella excrementihominis
GCA_958415425.1	CATYYX000000000	SAMEA114061519	Phascolarctobacterium faecium
GCA_958348445.1	CATVZD000000000	SAMEA114061450	Phascolarctobacterium succinatutens
GCA_958412355.1	CATYSQ000000000	SAMEA114061487	Phocaeicola dorei
GCA_958348935.1	CATWBJ000000000	SAMEA114061475	Phocaeicola plebeius
GCA_958348825.1	CATWAS000000000	SAMEA114061377	Providencia alcalifaciens
GCA_958349745.1	CATWEF000000000	SAMEA114061363	Rothia kristinae
GCA_958349375.1	CATWCT000000000	SAMEA114061440	Rothia mucilaginosa
GCA_958437955.1	CAUBPW000000000	SAMEA114061439	Ruthenibacterium lactatiformans
GCA_958415245.1	CATYYP000000000	SAMEA114061467	Schaalia odontolytica
GCA_958415905.1	CATYZT000000000	SAMEA114061422	Segatella buccae
GCA_958415035.1	CATYYC000000000	SAMEA114061529	Segatella copri
GCA_958404795.1	CATYCH000000000	SAMEA114061378	Segatella copri
GCA_958348905.1	CATWBB000000000	SAMEA114061495	Segatella copri
GCA_958438075.1	CAUBQH000000000	SAMEA114061469	Sellimonas intestinalis
GCA_958437925.1	CAUBPU000000000	SAMEA114061457	Senegalimassilia anaerobia
GCA_958415445.1	CATYYY000000000	SAMEA114061524	Streptococcus lutetiensis
GCA_958405715.1	CATYET000000000	SAMEA114061430	Streptococcus pasteurianus
GCA_958414895.1	CATYXT000000000	SAMEA114061512	Sutterella wadsworthensis
GCA_958348875.1	CATWAV000000000	SAMEA114061527	Sutterella wadsworthensis
GCA_958415575.1	CATYZF000000000	SAMEA114061544	Veillonella magna
GCA_958412115.1	CATYSD000000000	SAMEA114061360	Veillonella parvula
GCA_958437975.1	CAUBPY000000000	SAMEA114061441	Veillonella seminalis
GCA_958404885.1	CATYCR000000000	SAMEA114061461	Weissella confusa
GCA_958348585.1	CATVZS000000000	SAMEA114061394	[Clostridium] innocuum
GCA_958412255.1	CATYSH000000000	SAMEA114061438	[Clostridium] symbiosum
GCA_958412725.1	CATYTJ000000000	SAMEA114061499	[Ruminococcus] torques
GCA_958437885.1	CAUBPP000000000	SAMEA114061369	uncultured Acidaminococcus sp.
GCA_958349225.1	CATWCF000000000	SAMEA114061407	uncultured Actinomyces sp.
GCA_958349165.1	CATWCG000000000	SAMEA114061481	uncultured Actinomyces sp.
GCA_958415015.1	CATYYB000000000	SAMEA114061525	uncultured Actinomyces sp.
GCA_958349685.1	CATWEA000000000	SAMEA114061368	uncultured Actinomycetes bacterium
GCA_958405805.1	CATYEZ000000000	SAMEA114061344	uncultured Allisonella sp.
GCA_958405635.1	CATYER000000000	SAMEA114061411	uncultured Anaerobiospirillum sp.
GCA_958347925.1	CATVXJ000000000	SAMEA114061382	uncultured Anaerostipes sp.
GCA_958415675.1	CATYZM000000000	SAMEA114061404	uncultured Atopobiaceae bacterium
GCA_958412035.1	CATYSB000000000	SAMEA114061415	uncultured Atopobium sp.
GCA_958414835.1	CATYXN000000000	SAMEA114061502	uncultured Bacteroidales bacterium
GCA_958415125.1	CATYYI000000000	SAMEA114061533	uncultured Bacteroides sp.
GCA_958405825.1	CATYFC000000000	SAMEA114061453	uncultured Bifidobacterium sp.
GCA_958349085.1	CATWBQ000000000	SAMEA114061496	uncultured Bifidobacterium sp.
GCA_958437865.1	CAUBPO000000000	SAMEA114061410	uncultured Bifidobacterium sp.
GCA_958415075.1	CATYYF000000000	SAMEA114061520	uncultured Blautia sp.
GCA_958414885.1	CATYXU000000000	SAMEA114061510	uncultured Blautia sp.
GCA_958349125.1	CATWBV000000000	SAMEA114061425	uncultured Butyricicoccus sp.
GCA_958348915.1	CATWBA000000000	SAMEA114061501	uncultured Butyricicoccus sp.
GCA_958439065.1	CAUBUA000000000	SAMEA114061354	uncultured Butyricicoccus sp.
GCA_958405785.1	CATYEX000000000	SAMEA114061340	uncultured Citrobacter sp.
GCA_958415135.1	CATYYJ000000000	SAMEA114061530	uncultured Clostridiaceae bacterium
GCA_958348895.1	CATWAY000000000	SAMEA114061395	uncultured Clostridium sp.
GCA_958349075.1	CATWBR000000000	SAMEA114061396	uncultured Clostridium sp.
GCA_958415995.1	CATZAA000000000	SAMEA114061383	uncultured Clostridium sp.
GCA_958415515.1	CATYZG000000000	SAMEA114061528	uncultured Clostridium sp.
GCA_958415305.1	CATYYU000000000	SAMEA114061507	uncultured Clostridium sp.
GCA_958437755.1	CAUBPB000000000	SAMEA114061402	uncultured Collinsella sp.
GCA_958438035.1	CAUBQI000000000	SAMEA114061374	uncultured Collinsella sp.
GCA_958437935.1	CAUBPS000000000	SAMEA114061367	uncultured Collinsella sp.
GCA_958415505.1	CATYZC000000000	SAMEA114061547	uncultured Collinsella sp.
GCA_958415525.1	CATYZE000000000	SAMEA114061538	uncultured Collinsella sp.
GCA_958415665.1	CATYZK000000000	SAMEA114061376	uncultured Collinsella sp.
GCA_958415625.1	CATYZI000000000	SAMEA114061550	uncultured Collinsella sp.
GCA_958414995.1	CATYXZ000000000	SAMEA114061515	uncultured Collinsella sp.
GCA_958405565.1	CATYEN000000000	SAMEA114061534	uncultured Collinsella sp.
GCA_958412345.1	CATYSO000000000	SAMEA114061485	uncultured Collinsella sp.
GCA_958405815.1	CATYFB000000000	SAMEA114061346	uncultured Collinsella sp.
GCA_958348985.1	CATWBG000000000	SAMEA114061541	uncultured Collinsella sp.
GCA_958348975.1	CATWBH000000000	SAMEA114061548	uncultured Collinsella sp.
GCA_958437735.1	CAUBPD000000000	SAMEA114061458	uncultured Corynebacterium sp.
GCA_958404875.1	CATYCP000000000	SAMEA114061459	uncultured Corynebacterium sp.
GCA_958414935.1	CATYXV000000000	SAMEA114061504	uncultured Dialister sp.
GCA_958437835.1	CAUBPL000000000	SAMEA114061435	uncultured Erysipelotrichaceae bacterium
GCA_958349215.1	CATWCD000000000	SAMEA114061503	uncultured Eubacteriales bacterium
GCA_958412615.1	CATYTD000000000	SAMEA114061498	uncultured Eubacteriales bacterium
GCA_958415025.1	CATYYE000000000	SAMEA114061522	uncultured Eubacteriales bacterium
GCA_958415255.1	CATYYQ000000000	SAMEA114061509	uncultured Eubacteriales bacterium
GCA_958404805.1	CATYCK000000000	SAMEA114061413	uncultured Helicobacter sp.
GCA_958405795.1	CATYFA000000000	SAMEA114061444	uncultured Lachnospiraceae bacterium
GCA_958437845.1	CAUBPM000000000	SAMEA114061424	uncultured Lachnospiraceae bacterium
GCA_958348855.1	CATWAW000000000	SAMEA114061535	uncultured Lachnospiraceae bacterium
GCA_958349925.1	CATWEZ000000000	SAMEA114061338	uncultured Lactobacillus sp.
GCA_958405755.1	CATYEY000000000	SAMEA114061432	uncultured Megasphaera sp.
GCA_958412045.1	CATYSC000000000	SAMEA114061417	uncultured Megasphaera sp.
GCA_958349315.1	CATWCO000000000	SAMEA114061500	uncultured Megasphaera sp.
GCA_958348945.1	CATWBD000000000	SAMEA114061405	uncultured Megasphaera sp.
GCA_958350005.1	CATWFF000000000	SAMEA114061341	uncultured Megasphaera sp.
GCA_958349755.1	CATWEI000000000	SAMEA114061379	uncultured Megasphaera sp.
GCA_958349175.1	CATWCA000000000	SAMEA114061479	uncultured Neisseria sp.
GCA_958415895.1	CATYZU000000000	SAMEA114061406	uncultured Prevotella sp.
GCA_958415655.1	CATYZL000000000	SAMEA114061375	uncultured Prevotella sp.
GCA_958349985.1	CATWFB000000000	SAMEA114061403	uncultured Prevotella sp.
GCA_958350035.1	CATWFI000000000	SAMEA114061345	uncultured Prevotella sp.
GCA_958349045.1	CATWBN000000000	SAMEA114061356	uncultured Prevotella sp.
GCA_958349025.1	CATWBM000000000	SAMEA114061477	uncultured Prevotella sp.
GCA_958404855.1	CATYCO000000000	SAMEA114061455	uncultured Prevotellaceae bacterium
GCA_958415205.1	CATYYL000000000	SAMEA114061489	uncultured Roseburia sp.
GCA_958347945.1	CATVXG000000000	SAMEA114061420	uncultured Roseburia sp.
GCA_958404815.1	CATYCI000000000	SAMEA114061480	uncultured Rothia sp.
GCA_958347565.1	CATVVW000000000	SAMEA114061364	uncultured Rothia sp.
GCA_958404905.1	CATYCQ000000000	SAMEA114061456	uncultured Ruminococcus sp.
GCA_958437895.1	CAUBPR000000000	SAMEA114061451	uncultured Ruminococcus sp.
GCA_958349795.1	CATWEM000000000	SAMEA114061452	uncultured Ruminococcus sp.
GCA_958349015.1	CATWBK000000000	SAMEA114061497	uncultured Ruminococcus sp.
GCA_958415865.1	CATYZV000000000	SAMEA114061401	uncultured Selenomonadaceae bacterium
GCA_958349655.2	CATWDX000000000	SAMEA114061465	uncultured Streptococcus sp.
GCA_958415155.1	CATYYH000000000	SAMEA114061466	uncultured Streptococcus sp.
GCA_958412205.1	CATYSI000000000	SAMEA114061443	uncultured Streptococcus sp.
GCA_958404785.1	CATYCF000000000	SAMEA114061476	uncultured Streptococcus sp.
GCA_958350105.1	CATWFQ000000000	SAMEA114061388	uncultured Streptococcus sp.
GCA_958349905.1	CATWEU000000000	SAMEA114061416	uncultured Streptococcus sp.
GCA_958348745.1	CATWAJ000000000	SAMEA114061386	uncultured Streptococcus sp.
GCA_958348925.1	CATWBC000000000	SAMEA114061488	uncultured Subdoligranulum sp.
GCA_958415685.1	CATYZN000000000	SAMEA114061357	uncultured Subdoligranulum sp.
GCA_958415885.1	CATYZS000000000	SAMEA114061421	uncultured Sutterella sp.
GCA_958415215.1	CATYYN000000000	SAMEA114061549	uncultured Sutterella sp.
GCA_958412015.1	CATYRZ000000000	SAMEA114061408	uncultured Sutterella sp.
GCA_958405605.1	CATYEQ000000000	SAMEA114061545	uncultured Sutterella sp.
GCA_958349115.1	CATWBT000000000	SAMEA114061536	uncultured Sutterella sp.
GCA_958438005.1	CAUBQE000000000	SAMEA114061371	uncultured Sutterella sp.
GCA_958404845.1	CATYCN000000000	SAMEA114061392	uncultured Sutterellaceae bacterium
GCA_958439215.1	CAUBUN000000000	SAMEA114061414	uncultured Veillonella sp.
GCA_958415005.1	CATYYA000000000	SAMEA114061526	uncultured Veillonella sp.
GCA_958415295.1	CATYYR000000000	SAMEA114061514	uncultured Veillonella sp.
GCA_958412215.1	CATYSJ000000000	SAMEA114061387	uncultured Veillonella sp.
GCA_958349345.1	CATWCS000000000	SAMEA114061483	uncultured Veillonella sp.
GCA_958348795.1	CATWAN000000000	SAMEA114061393	uncultured Veillonella sp.
GCA_958439155.1	CAUBUJ000000000	SAMEA114061343	uncultured Veillonellaceae bacterium
GCA_958349055.1	CATWBO000000000	SAMEA114061516	uncultured bacterium
GCA_958349095.1	CATWBU000000000	SAMEA114061372	uncultured bacterium

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EMG produced TPA metagenomics assembly of PRJEB52748 data set (Gut microbiome function and composition in infants from rural Kenya and association with human milk oligosaccharides).

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