ID 993960 - BioProject

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Accession: PRJEB64259 ID: 993960

EMG produced TPA metagenomics assembly of PRJEB42572 data set (Dental plaque microbiomes from hunter-gatherer and subsistence farmer populations in Cameroon).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB42572, and was assembled with metaspades v3. More...

Accession	PRJEB64259
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "MGnify: the microbiome analysis resource in 2020.", Nucleic Acids Res, 2020 Jan 8;48(D1):D570-D578
Submission	Registration date: 12-Jul-2023 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	6602
WGS master	49
Publications
PubMed	1
PMC	1
Other datasets
BioSample	49
Assembly	49

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

49
49

Assembly	WGS	BioSample	Taxonomy
GCA_963546405.1	CAUUNL000000000	SAMEA114449358	Abiotrophia defectiva
GCA_963546115.1	CAUUME000000000	SAMEA114449341	Actinomyces massiliensis
GCA_963552505.1	CAUVLF000000000	SAMEA114449340	Actinomyces oris
GCA_963553635.1	CAUVQF000000000	SAMEA114449374	Aggregatibacter aphrophilus
GCA_963554095.1	CAUVQI000000000	SAMEA114449359	Aggregatibacter kilianii
GCA_963547575.1	CAUUSA000000000	SAMEA114449368	Arachnia propionica
GCA_963552495.1	CAUVLG000000000	SAMEA114449346	Corynebacterium durum
GCA_963553865.1	CAUVQO000000000	SAMEA114449375	Corynebacterium durum
GCA_963546755.1	CAUUOM000000000	SAMEA114449384	Corynebacterium matruchotii
GCA_963552425.1	CAUVKZ000000000	SAMEA114449378	Corynebacterium matruchotii
GCA_963546665.1	CAUUOJ000000000	SAMEA114449350	Corynebacterium matruchotii
GCA_963553845.1	CAUVQG000000000	SAMEA114449344	Corynebacterium matruchotii
GCA_963552755.1	CAUVLL000000000	SAMEA114449343	Corynebacterium matruchotii
GCA_963552655.1	CAUVLJ000000000	SAMEA114449356	Hoylesella loescheii
GCA_963553605.1	CAUVOT000000000	SAMEA114449357	Lautropia mirabilis
GCA_963551385.1	CAUVGP000000000	SAMEA114449365	Neisseria elongata
GCA_963547615.1	CAUURT000000000	SAMEA114449369	Neisseria elongata
GCA_963552765.1	CAUVLN000000000	SAMEA114449379	Neisseria sicca
GCA_963547585.1	CAUURQ000000000	SAMEA114449353	Porphyromonas gingivalis
GCA_963552265.1	CAUVKD000000000	SAMEA114449381	Propionibacterium acidifaciens
GCA_963553615.1	CAUVQA000000000	SAMEA114449345	Rothia aeria
GCA_963550955.1	CAUVFL000000000	SAMEA114449382	Schaalia cardiffensis
GCA_963546825.1	CAUUOV000000000	SAMEA114449376	Selenomonas noxia
GCA_963546785.1	CAUUOU000000000	SAMEA114449385	uncultured Actinobaculum sp.
GCA_963552715.1	CAUVLM000000000	SAMEA114449355	uncultured Actinomyces sp.
GCA_963552815.1	CAUVMS000000000	SAMEA114449363	uncultured Actinomyces sp.
GCA_963546835.1	CAUUOW000000000	SAMEA114449373	uncultured Aggregatibacter sp.
GCA_963553645.1	CAUVPF000000000	SAMEA114449371	uncultured Candidatus Saccharibacteria bacterium
GCA_963553685.1	CAUVPL000000000	SAMEA114449362	uncultured Candidatus Saccharibacteria bacterium
GCA_963546285.1	CAUUNU000000000	SAMEA114449352	uncultured Corynebacterium sp.
GCA_963554065.1	CAUVPU000000000	SAMEA114449354	uncultured Corynebacterium sp.
GCA_963552855.1	CAUVMZ000000000	SAMEA114449347	uncultured Corynebacterium sp.
GCA_963552635.1	CAUVLK000000000	SAMEA114449351	uncultured Lautropia sp.
GCA_963547645.1	CAUURP000000000	SAMEA114449367	uncultured Mitsuokella sp.
GCA_963547625.1	CAUURW000000000	SAMEA114449380	uncultured Mitsuokella sp.
GCA_963552515.1	CAUVLD000000000	SAMEA114449386	uncultured Neisseria sp.
GCA_963546155.1	CAUUMG000000000	SAMEA114449348	uncultured Neisseria sp.
GCA_963547395.1	CAUURS000000000	SAMEA114449383	uncultured Neisseria sp.
GCA_963553785.1	CAUVQE000000000	SAMEA114449339	uncultured Neisseriaceae bacterium
GCA_963547595.1	CAUURV000000000	SAMEA114449366	uncultured Olsenella sp.
GCA_963552645.1	CAUVLH000000000	SAMEA114449370	uncultured Ottowia sp.
GCA_963546635.1	CAUUNR000000000	SAMEA114449360	uncultured Porphyromonas sp.
GCA_963553835.1	CAUVPT000000000	SAMEA114449372	uncultured Porphyromonas sp.
GCA_963552485.1	CAUVKT000000000	SAMEA114449349	uncultured Propionibacteriaceae bacterium
GCA_963547665.1	CAUURI000000000	SAMEA114449361	uncultured Propionibacteriaceae bacterium
GCA_963547335.1	CAUUQR000000000	SAMEA114449342	uncultured Propionibacteriaceae bacterium
GCA_963547255.1	CAUUPZ000000000	SAMEA114449387	uncultured Propionibacterium sp.
GCA_963553705.1	CAUVQK000000000	SAMEA114449364	uncultured Streptococcus sp.
GCA_963547485.1	CAUURX000000000	SAMEA114449377	uncultured Tannerella sp.

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EMG produced TPA metagenomics assembly of PRJEB42572 data set (Dental plaque microbiomes from hunter-gatherer and subsistence farmer populations in Cameroon).

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