ID 875855 - BioProject

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Accession: PRJEB55657 ID: 875855

EMG produced TPA metagenomics assembly of PRJNA576566 data set (metagenomic studies of vaginal microbiome in HPV16 infection).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA576566, and was assembled with metaSPAdes v3. More...

Accession	PRJEB55657
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 1-Sep-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	3117
WGS master	71
Publications
PubMed	1
PMC	1
Other datasets
BioSample	71
Assembly	71

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

71
71

Assembly	WGS	BioSample	Taxonomy
GCA_947090555.1	CAMUOX000000000	SAMEA111491458	Actinomyces culturomici
GCA_947089795.1	CAMULK000000000	SAMEA111491453	Aerococcus christensenii
GCA_947087635.1	CAMUDP000000000	SAMEA111491501	Anaerococcus tetradius
GCA_947087005.1	CAMUAY000000000	SAMEA111491497	Atopobium deltae
GCA_947086705.1	CAMTZZ000000000	SAMEA111491452	Atopobium minutum
GCA_947090205.1	CAMUNF000000000	SAMEA111491461	Dialister micraerophilus
GCA_947090055.1	CAMUMY000000000	SAMEA111491481	Enterococcus faecalis
GCA_947090655.1	CAMUOO000000000	SAMEA111491464	Gardnerella vaginalis
GCA_947090035.1	CAMUMH000000000	SAMEA111491467	Gardnerella vaginalis
GCA_947086555.1	CAMTZD000000000	SAMEA111491489	Gardnerella vaginalis
GCA_947089705.1	CAMULJ000000000	SAMEA111491451	Gardnerella vaginalis
GCA_947087705.1	CAMUDK000000000	SAMEA111491483	Gardnerella vaginalis
GCA_947090015.1	CAMUMF000000000	SAMEA111491476	Gardnerella vaginalis
GCA_947090285.1	CAMUNO000000000	SAMEA111491478	Gardnerella vaginalis
GCA_947090325.1	CAMUNV000000000	SAMEA111491477	Gardnerella vaginalis
GCA_947090665.1	CAMUOP000000000	SAMEA111491457	Gemelliphila asaccharolytica
GCA_947086935.1	CAMUAP000000000	SAMEA111491488	Lactobacillus crispatus
GCA_947086695.1	CAMTZH000000000	SAMEA111491484	Lactobacillus gasseri
GCA_947086515.1	CAMTZE000000000	SAMEA111491479	Lactobacillus gasseri
GCA_947086835.1	CAMUAE000000000	SAMEA111491480	Lactobacillus iners
GCA_947087835.1	CAMUEF000000000	SAMEA111491521	Lactobacillus iners
GCA_947089995.1	CAMULZ000000000	SAMEA111491471	Lactobacillus jensenii
GCA_947090395.1	CAMUNW000000000	SAMEA111491475	Lactobacillus jensenii
GCA_947087355.1	CAMUCE000000000	SAMEA111491520	Lactobacillus johnsonii
GCA_947087755.1	CAMUDV000000000	SAMEA111491517	Mageeibacillus indolicus
GCA_947087235.1	CAMUBW000000000	SAMEA111491493	Metamycoplasma hominis
GCA_947087675.1	CAMUDJ000000000	SAMEA111491465	Mobiluncus curtisii
GCA_947090355.1	CAMUNX000000000	SAMEA111491472	Mobiluncus mulieris
GCA_947089195.1	CAMUJJ000000000	SAMEA111491508	Peptococcus niger
GCA_947090065.1	CAMUMT000000000	SAMEA111491502	Peptoniphilus harei
GCA_947090595.1	CAMUOS000000000	SAMEA111491454	Peptoniphilus lacrimalis
GCA_947090405.1	CAMUNS000000000	SAMEA111491470	Peptoniphilus vaginalis
GCA_947086575.1	CAMTZK000000000	SAMEA111491500	Peptostreptococcus anaerobius
GCA_947087775.1	CAMUDY000000000	SAMEA111491519	Prevotella amnii
GCA_947089735.1	CAMULN000000000	SAMEA111491455	Prevotella bivia
GCA_947087115.1	CAMUBN000000000	SAMEA111491496	Prevotella disiens
GCA_947087655.1	CAMUDT000000000	SAMEA111491492	Prevotella ihumii
GCA_947086745.1	CAMUAD000000000	SAMEA111491463	Slackia exigua
GCA_947089185.1	CAMUJK000000000	SAMEA111491482	Staphylococcus epidermidis
GCA_947087255.1	CAMUCA000000000	SAMEA111491505	Streptococcus anginosus
GCA_947090115.1	CAMUMS000000000	SAMEA111491506	Veillonella montpellierensis
GCA_947087045.1	CAMUBA000000000	SAMEA111491494	uncultured Arcanobacterium sp.
GCA_947090525.1	CAMUON000000000	SAMEA111491469	uncultured Atopobium sp.
GCA_947090645.1	CAMUOQ000000000	SAMEA111491507	uncultured Atopobium sp.
GCA_947087685.1	CAMUDH000000000	SAMEA111491486	uncultured Atopobium sp.
GCA_947087645.1	CAMUDN000000000	SAMEA111491491	uncultured Bulleidia sp.
GCA_947090385.1	CAMUNZ000000000	SAMEA111491473	uncultured Campylobacter sp.
GCA_947090635.1	CAMUOM000000000	SAMEA111491515	uncultured Candidatus Saccharibacteria bacterium
GCA_947087155.1	CAMUBJ000000000	SAMEA111491509	uncultured Clostridia bacterium
GCA_947087615.1	CAMUDO000000000	SAMEA111491498	uncultured Clostridia bacterium
GCA_947086715.1	CAMTZX000000000	SAMEA111491466	uncultured Clostridia bacterium
GCA_947090005.1	CAMUMA000000000	SAMEA111491462	uncultured Clostridia bacterium
GCA_947086735.1	CAMTZW000000000	SAMEA111491456	uncultured Coriobacteriales bacterium
GCA_947086605.1	CAMTZG000000000	SAMEA111491504	uncultured Dialister sp.
GCA_947090145.1	CAMUNE000000000	SAMEA111491514	uncultured Francisella sp.
GCA_947090375.1	CAMUOC000000000	SAMEA111491485	uncultured Gardnerella sp.
GCA_947088155.1	CAMUFL000000000	SAMEA111491512	uncultured Gardnerella sp.
GCA_947086535.1	CAMTZL000000000	SAMEA111491510	uncultured Gardnerella sp.
GCA_947086975.1	CAMUAW000000000	SAMEA111491495	uncultured Gordonibacter sp.
GCA_947089935.1	CAMULY000000000	SAMEA111491468	uncultured Lachnospiraceae bacterium
GCA_947086635.1	CAMTZF000000000	SAMEA111491516	uncultured Lachnospiraceae bacterium
GCA_947090275.1	CAMUNR000000000	SAMEA111491487	uncultured Lactobacillus sp.
GCA_947086955.1	CAMUAK000000000	SAMEA111491474	uncultured Megasphaera sp.
GCA_947087535.1	CAMUDA000000000	SAMEA111491511	uncultured Megasphaera sp.
GCA_947090515.1	CAMUOR000000000	SAMEA111491460	uncultured Megasphaera sp.
GCA_947087965.1	CAMUES000000000	SAMEA111491518	uncultured Mobiluncus sp.
GCA_947086565.1	CAMTZN000000000	SAMEA111491499	uncultured Peptoniphilus sp.
GCA_947087665.1	CAMUDR000000000	SAMEA111491490	uncultured Peptostreptococcus sp.
GCA_947087765.1	CAMUDZ000000000	SAMEA111491513	uncultured Prevotella sp.
GCA_947087525.1	CAMUDC000000000	SAMEA111491459	uncultured Prevotellaceae bacterium
GCA_947087625.1	CAMUDQ000000000	SAMEA111491503	uncultured Veillonellaceae bacterium

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EMG produced TPA metagenomics assembly of PRJNA576566 data set (metagenomic studies of vaginal microbiome in HPV16 infection).

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